Sphingobium cloacae: SCLO_1023560
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Entry
SCLO_1023560 CDS
T05301
Name
(GenBank) ribonuclease Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCLO_1023560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclo03019
]
SCLO_1023560
03009 Ribosome biogenesis [BR:
sclo03009
]
SCLO_1023560
Enzymes [BR:
sclo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SCLO_1023560
Messenger RNA biogenesis [BR:
sclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCLO_1023560
Ribosome biogenesis [BR:
sclo03009
]
Prokaryotic type
rRNA processing factors
SCLO_1023560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BAV65396
UniProt:
A0A1E1F4F3
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All DBs
Position
SCLO_1:complement(2677188..2679899)
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AA seq
903 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRAEVDEDEEGLTGEDGV
EVVVATHHEDEEGGEDADHGEGSGEGGEKPGRRGRGRGRGGDDAADELRRKRMALRRRYK
IQDVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADR
KRLKSIIADMALPSTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLQSAAPALIH
NDSDLIKRAIRDIYNKDIEEVIVEGEDGYRAAKDFMKLLMPSHARRVKQYADAVSLFQRA
SVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAARE
IARQLRLRDMAGLVVIDFIDMEVNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSR
QRLRTGVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGSVVTLRASQEAAF
YVLNNKRRELDEIEQRYGVTIVILPDGEVEGARMSVEPSGPRPERVVSYAPLVEEEDDLD
VIEEEEEEAEEEEVPSEREERGEDREGGRRRRRRRRRRGGQREDGGEPASESGEDGEAEA
ESETEAGEDASEGADAETSEEGEGGRKRGRRGRRGGRRRREGGAEEAMSEGVEAAEPVEE
APAAEPEAAPEAEAAAEDAAAADAPKTRRRPRARKAKEAVAEPAAAEMAEPMAETPMEEP
VPAAEEAPAKPKRAPRRKKAVASEAEAADAPPATEAVAAEPESEAKPKPKRAPRRKKTVA
SEAEGADAAIAEAPVVAPEAAVEAPQSVAPETAAAEVESMETAEEAEDNGSPQRGWWQRT
FGQ
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtc
aagggaaaccggatcgaggagtttgatttcgagtccgccgagcacaaacagctcaagggc
aatatctatctcgccaaggtcacccgcgtggaaccgtcgcttcaggcggcgttcgtggat
tatggcggcaaccgccacggcttcctcgccttttcggaaatccatcccgactattaccag
atcccgcgcgaagaccgcgaagccctgctgcgcgaggaacgcgcccatgccgaggaagag
gccgcgctgcgcgccgaggtcgacgaggatgaagagggcctgaccggcgaggacggcgtg
gaagtcgtcgtcgcgacccatcatgaggatgaggaaggcggcgaggacgcggaccatggc
gaagggagcggcgaaggcggcgaaaagccgggacgccgggggcgcggccggggccgtggc
ggcgacgatgccgccgacgaactgcgccgcaagcgcatggcgctgcgccgccgctacaag
atccaggacgtcatcaagcgccgccaggtgctgctggtccaggtcgtcaaggaagagcgc
ggcaacaagggcgcggcgctgaccacctatctcagcctcgcgggccgttactgcgtgctg
atgcccaacacgtcgcatggcggcggcatttcgcgcaagatcagcaacgccgccgaccgc
aagcggctgaagtccatcatcgccgacatggcgctgccctccaccatgggctgcatcgtc
cgcacggcggggctgcaacgcaccaagaccgagatcaagcgcgacttcgactatctggcg
cgcctgtgggacgagattcgcgagaatacgctgcaatccgccgcccccgcgctgatccac
aatgacagcgaccttatcaagcgggcgatccgcgacatctacaacaaggatatcgaggaa
gtcatcgtcgagggcgaggacggatatcgggccgccaaggacttcatgaagctgctgatg
cccagccatgcgcggcgggtgaagcaatatgccgacgcggtgtcgctgttccagcgggcg
agcgtcgaggatcaactcgcggccatgtacaatccggtggtgcagttgaagtcgggcggc
tatctggtcatcaacccgaccgaggcgctggtgtcgatcgacatcaactccggccggtcg
acccgcgagcatgggatcgagcagaccgccgtcgccaccaacctggaggccgcgcgcgag
atcgcgcggcagcttcgcctgcgcgacatggccggcctcgtcgtcatcgacttcatcgac
atggaggtgaactccaacatccgcaaggtcgagaaggcgatgaaggaggcgctgaaggac
gaccgcgcccgcatccaggtcggccggatttcgggcttcggcctgatggagatgagccgc
cagcggctgcggaccggcgtcctggaagcatcgacgcgccagtgcccgcattgcgagggc
accgggctggtccgcacggcatcgtcggcgggcctcagcgcgctgcggatgctggaagaa
gaagcggcgcgcgggcgaggcagcgtcgttacgctgcgcgccagtcaggaagcggccttc
tacgtcctcaacaacaagcggcgcgagctggacgagatcgagcagcgttacggcgtcacc
atcgtcatccttccggatggcgaggtggagggcgcgcgcatgtcggtcgaaccgagcggt
ccgcgtccggagcgggtcgtgagctatgcgcctctcgtcgaggaagaggacgacctcgat
gtgatcgaggaggaagaggaagaagccgaggaggaggaagtcccgtccgaacgcgaggag
cgtggcgaggaccgcgaaggcggacgccgtcgccgtcgccgccgccgccgccggggcggc
cagcgcgaggatggcggtgagccggcgtcggaatccggtgaggatggcgaagcggaggcc
gaatctgagactgaggctggcgaggacgcctcggaaggcgccgacgcggaaacctccgag
gaaggcgaaggcgggcgcaagcgtggccgccggggccgtcggggcggacgccgccgtcgc
gaaggcggtgccgaagaggctatgagcgaaggcgtggaagctgcggagccggtcgaggaa
gcgccagccgctgaaccggaggcagcacctgaagccgaagccgccgcagaagatgccgcc
gcagcggatgcccccaagacgcgtcgccgtccccgcgcccgcaaggccaaggaagccgtg
gccgaaccggcggcggcggaaatggccgagccgatggcggaaacgccaatggaagagccc
gttcccgctgcggaggaagcgcctgccaagcccaagcgcgcgccgcgtcgcaagaaggct
gtcgcgagcgaagccgaagcggccgatgctccccccgcgacggaagccgtcgctgcggag
ccggaatccgaagcgaaaccgaagcccaagcgcgccccgcgccgcaagaagactgtcgcg
agcgaagccgaaggcgctgacgccgccattgcggaggcgcctgtggtcgcgccggaagcc
gccgtggaagcgcctcagtcagtagctcccgaaacggcggccgctgaggtcgaaagcatg
gaaaccgccgaagaggcagaggataatggctcgccccagcgcggctggtggcagcgcacc
ttcgggcaataa
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