Sphingobium cloacae: SCLO_1027940
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Entry
SCLO_1027940 CDS
T05301
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03030
DNA replication
sclo03410
Base excision repair
sclo03420
Nucleotide excision repair
sclo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCLO_1027940
03410 Base excision repair
SCLO_1027940
03420 Nucleotide excision repair
SCLO_1027940
03440 Homologous recombination
SCLO_1027940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sclo03032
]
SCLO_1027940
03400 DNA repair and recombination proteins [BR:
sclo03400
]
SCLO_1027940
Enzymes [BR:
sclo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCLO_1027940
DNA replication proteins [BR:
sclo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCLO_1027940
DNA repair and recombination proteins [BR:
sclo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SCLO_1027940
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCLO_1027940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
HHH_5
HHH_2
Ribosomal_60s
HAMP_N3
HHH
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
BAV65834
UniProt:
A0A1E1F5P8
LinkDB
All DBs
Position
SCLO_1:complement(3219688..3222474)
Genome browser
AA seq
928 aa
AA seq
DB search
MSQNHLYLVDGSGYIFRAYHQLPPLTNQHGQPVGAVYGYTTMLWKLATELGNADGPTHLA
VVLDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEDGFEADDIIA
SYTKAAVAQGWKVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVQPDQLGDV
LALMGDSVDNVPGIPGIGPKTAAKLITEYGSLDAALEAAPSMKKSKMQENLIAHADMARL
SRRLVTLHDAMDLPEPLDDLTLKGIPPEPLQAFLSHHGFKSLLARLGAPAAAVAVAATAA
AVSESALPPAPKAEEEPPIDRSLYETVVTEEALDRWIAEATAEGVVAVDTETDMLDCVSC
ALVGVSLAIGPSKACYIPVGHQGQDMFAERPEQLPKELVLAKLKPLLEDDSILKVGQNLK
YDITVLRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKVHLNHSCISFKDVAGTGK
KQISFAEVPLDKATEYSAEDADVTLRLWKLFKTRVANEGATRIYELVDRPLVSVIARMEH
EGIKVDREALSRLSAEFTAGIAALETEIHELAGQPFAIGSTQQLGAILFDKLGYKGGRKG
KSGAYSTDVNILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTIRVHTSYSL
SGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVP
ALKDAFARGEDIHAATAQQLFGEVNRDTRSRAKTINFAILYGISRWGLASRLEITADEAQ
DMISRYYERFPGISIYINETIEKARERGYTETLFGRKTWFPRIRAAIQHERQGAERAAIN
APIQGTSADIIKRAMVRMGPALAAERLHDVKMLLQVHDELVFELPEADVERASPIIRRVM
ERAAEPLVKLSVPLGVEIGHGPSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaatcatctctatctggtcgacggcagcggctatatcttccgcgcctatcac
cagcttccgccgctcaccaaccagcatggccagccggtcggcgcggtctatggttatacg
acgatgctgtggaagctggcgacggagctgggcaatgcggacggacccacgcacctcgcc
gtggtgctggacaagggcagccacaccttccgcaacgacatgtacgatcagtacaaggcg
aaccgcccgcccgcgccggaggatctggtcccccaattccccatgatccgcgacgcgacc
cgcgccttctccctcccctgcatcgaggaggacgggttcgaggcagacgacatcatcgcc
agctataccaaggcggccgtagcgcagggctggaaagtcaccatcgtcagttccgacaag
gatctgatgcaactcatccagcccggcgtcgacatgtacgacacgatgaagaacgagcgg
cgcggcgcggactatgtgatggggaagttcggcgtccagccggaccaactgggcgacgtg
ctcgcgctgatgggcgacagcgtggacaatgtgcccggcattcccggcatcggccccaag
acggcggcgaagctcatcaccgaatatggctcgctcgacgccgcgctggaagccgcgccg
tcgatgaagaagtcgaagatgcaggagaacctgatcgcccatgccgacatggcgcggctg
tcgcgcaggctggtgacgctgcatgacgcgatggacctgcccgagccgctcgacgacctg
acgctcaagggtattccgcccgagcccttgcaagcattcctgtcgcatcacggcttcaag
tcgctgctcgcccggctgggcgcgcccgcagccgccgtggcggtcgccgcgactgcggcc
gccgtcagcgaatccgcattgcctcccgctcccaaggcggaggaggaaccgcccatcgac
cgtagcctctacgaaacggtggtgacggaggaagcgctggaccgctggatcgcggaggcg
acggcggaaggcgtggtcgcggtcgacaccgaaaccgacatgctcgactgcgtatcctgc
gcgctggtgggcgtcagcctcgccatcgggccctccaaagcctgctacatcccggtcggc
catcaggggcaggacatgttcgccgagcgcccggaacagttgcccaaggagctggttctc
gcgaaactcaagccgctgctggaggacgacagcatcctcaaggtcggccagaaccttaaa
tatgacatcactgtcctgcgccgccacgggatcgagatcgcgccctatgacgacaccatc
gtcatgagcttcgacctcgacgccgggcagagccttgccggacatggcatggacgaggca
gcgaaggtgcacctcaatcatagctgcatcagtttcaaggacgtggcgggcaccggcaag
aagcagatcagcttcgccgaagtgccgctcgacaaggcgaccgaatattccgccgaggac
gcggacgtcaccctgcgcctgtggaagctgttcaagacccgcgtcgccaatgaaggcgcg
acccgcatctacgaactggtcgaccgcccgctcgtttccgtgatcgcgcggatggagcat
gagggaatcaaggtggaccgcgaggcgctgtcccgcctttccgccgaattcaccgccggg
atcgcggcgctggagacggaaatccatgaactggcgggtcaacccttcgctatcggatcg
acgcagcaactgggcgcgatcctgttcgacaagctgggctacaagggcgggcgcaagggc
aagtcgggagcctattcgacggatgtcaacatcctggaacaattgaaggcccaaggcgcg
gagatcgcgggcaaggtgctggactggcggcagctttccaagctcaagtccacctatacc
gacgcgcttcaggcgcagatcaacagggatacgatccgcgtccacaccagctattcgctg
tcgggcgcgcagacgggccgcctgtcatcgaccgaccccaatctccagaacatcccaatc
cgtaccgaggtcggccgccagatccgccatgccttcgtcgcggagccgggccatgtcatc
ctggcggcggactatagccagatcgaactgcgcctcgccgcgcatatggcggacgtgccc
gcgctgaaagacgccttcgcgcgcggcgaggacatccatgccgccaccgcgcagcagctt
ttcggggaagtcaaccgcgacacgcgcagccgcgccaagacgatcaacttcgcgatcctc
tacggcatttcgcgctggggcctcgcctcgcggctggagatcacggcggacgaggcgcag
gacatgatatcccgctattatgaacgctttcccggcatcagcatctatatcaacgagacg
atcgagaaggcccgcgagcgcggctataccgaaacgctcttcggccggaagacatggttc
ccccgcatccgcgccgcgatccagcatgaacggcagggtgcggagcgcgccgcgatcaac
gcgccgatccagggcaccagcgccgacatcatcaagcgcgccatggtccgcatgggaccg
gctctcgccgccgagaggctgcatgacgtgaagatgctgctccaggtccatgacgaactg
gtgttcgaactgcccgaagccgatgtggagcgcgccagccccatcatccgccgcgtgatg
gaacgtgccgccgaaccgctggtgaaactctccgtgccgctgggcgtcgagatcggccat
ggcccgagttggggcgcggcgcactga
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