Sphingobium cloacae: SCLO_1031260
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Entry
SCLO_1031260 CDS
T05301
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCLO_1031260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclo03021
]
SCLO_1031260
03400 DNA repair and recombination proteins [BR:
sclo03400
]
SCLO_1031260
Enzymes [BR:
sclo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCLO_1031260
Transcription machinery [BR:
sclo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCLO_1031260
DNA repair and recombination proteins [BR:
sclo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCLO_1031260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Vsr
Motif
Other DBs
NCBI-ProteinID:
BAV66166
UniProt:
A0A1E1F6L8
LinkDB
All DBs
Position
SCLO_1:complement(3580565..3584821)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPVQKAETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKVALLDELATTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIVSRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKVTMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPNTGRMAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTVVEEDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGTVIVPIGTLLDEALVAQIEAIGTQSVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
IVDKNGRRLSLARNGEVAIIDSEGRERETHRLPYGATILFADGDAVKKGERFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEFRGAARTKEDLRPRLTLLDDES
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEITVSGDTT
LLVGEQVDREEMDEINSKLQPGFQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAEEHAAELAQGPEAAIGNDPLAVVQGEDFTTQDMD
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgacgaacttcgcgaaccccgtccagaaggcggagactttcgaccagatc
cagatcggcctggcctccccggagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactatcgcacgttcaagcccgaacgcgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactatgaatgcctgtgcggcaagtataagcgcatgaagtat
aagggcatcgtctgcgagaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgcgag
cggatgggccatatcgaactggcagcgcccgtggcgcacatctggttcctgaagtcgctg
cccagccgcatcggcctgctgctcgacatgcagttgaagcagcttgagcgcgtcctttac
ttcgaatcctacatcgtcaccgagccgggcctgaccccgctggagaagttccagcttctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaggacgccttctccgccgga
atcggcgcggaagcggtcaagcagatgctgatggacctcgaccttgagggcgagaaggtc
gcgctactcgacgaactggccaccaccaagtcggaactcaagcccaagaagatcatcaag
cggctgaaggtcgtggagagcttcctggaatcgggcaaccgtccggaatggatgatcctg
gacgtggtgccggtcatcccgccggaactgcgcccgctggtgccgctggacggcggccgc
ttcgcgacgtcggacctcaatgacctctatcgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgtcgacgcgctattcgacaatggccgccgcggccgcgtcatcaccggtgcg
aacaagcgtccgctgaagtcgctgtccgatatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccgggccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctgtccatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacattctggacgaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctccaccgcctgggcatccaggcgttcgagccg
gtcctcattgaaggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcg
gacttcgacggcgaccagatggccgtgcacgttccgctgagccttgaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtcccctcgcaggacatggttctgggtatctattacctgtccatggagcgcgaaggc
gagccgggcgaaggcatgttgctggccgacatgcaggaagtgcatcaggcgctctatgcc
aaggccgtgacgctgcactccaagatcgtcagccgcgtgccgcagaccgacgaggccggc
aaccagtatatgaagcggttcgagacgacgccgggccgcatgctgctgggcgaatgcctg
cccaagtcgcacaaggtgcccttcgatgtcgtcaaccgccttctcaccaagaaggagatc
ggcgacgtcatcgatcaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggcgggcatctcgttcggcaag
gacgacatggtcatccccgacagcaaggtgacgatggtcgacgagaccaaggcgctggtg
gccgattatgagcagcaatatcaggacggcctcatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcgctgcggcgatcaggtcgcgaacgccatgatggacgagatc
cgcgcccagccgaaggacccgaacacgggccgcatggcgccgatcaactcgatctacatg
atggcgcactccggcgctcgtggctcgcaggcccagatgaaacagcttgcggggatgcgc
ggcctgatggccaagccttcgggcgagatcattgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcacggtcgtcgaggaggattgcggcaccgaaaaggcgctggagatgaaggcc
atcgtgcagggcggctcggtcatcgcgtcgctgggcgagcgcatcctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggacggcacggtcatcgttccgatcggcacgctgctc
gacgaagctctggtggcgcagatcgaggccatcggcacccagtcggtcaagatccgctcg
cctctcatctgcgaaagcaagatgggcgtgtgcggcaaatgctacggccgtgacctcgcc
cgtggtacgccggtcaatatcggcgaagcggtcggcgtcatcgcggcgcagtccatcggc
gaaccgggcacgcagcttacgatgcggaccttccatatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccatgtcggacggcacgatcgagctgcgcgacatgccgacc
atcgtcgacaagaacggccgccgcctgagcctcgcccgcaacggcgaagtcgcgatcatc
gacagcgaaggccgcgagcgcgaaacgcaccgcctgccttacggcgcgaccatcctgttc
gcggatggcgacgccgtgaagaagggcgagcgcttcgccgaatgggaccccttcaccatg
ccggtcatcaccgaaaagccgggcatcgtgaagtatcaggacctgatcgacggcaagacg
ctgaccgagcagaccgacgaagccaccggcatcgcgcagcgcgtggtcacggaattccgt
ggcgccgcccgcacgaaggaggatctgcgtccgcgcctgaccctgctggacgatgaatcc
ggcgaggctgcccgctacatgctggcggtgggcgcgacgctgtcagtcgacgatggcgct
caggtgcaggcgggcgacgtgctggcgcgtgtctctcgcgaagcggcgaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcgcgcaagcccaaggacaac
gccatcatcgccaaggtgtcgggccgcgtccagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatcccgaggatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgacttcgtgaagcgcggcgacaacctgatcggcggt
tcgcccgacccgcacgacattctggaagtgctcggcatcgagccgctggccgaatatctg
gtggcggaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcatatc
gagacgatcgttcgtcagatgctgcagaaggtcgagatcaccgtgtccggcgacaccacg
ctgctggtgggcgagcaggtcgaccgcgaggaaatggacgagatcaacagcaagctccag
ccgggcttccagcctgccgagggcaagccggtgctgctgggcatcaccaaggcttcgttg
cagacgcgttcgttcatctcggcggcgtccttccaggaaaccacccgcgtcctcacggaa
gcggcggttcagggcaagaaggacacgctggtgggcctgaaggaaaatgtcatcgtcggc
cgcctgatcccggcgggcacgggcgcgggcatgaaccgcatgcgcgtcgccgcctcgtcg
cgcgacgcggcgatgcgggccgccctgcgcgcgtcgagccaggtcgacctgatcgcgccg
aagaccgcggccgaggaacatgccgccgaactggcgcagggtccggaagccgcgatcggc
aacgacccgctggccgtcgtgcagggtgaggacttcaccacgcaggacatggactga
DBGET
integrated database retrieval system
