Sphingobium cloacae: SCLO_1031990
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Entry
SCLO_1031990 CDS
T05301
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sclo
Sphingobium cloacae
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sclo03016
]
SCLO_1031990
Enzymes [BR:
sclo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SCLO_1031990
Transfer RNA biogenesis [BR:
sclo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SCLO_1031990
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
BAV66239
UniProt:
A0A1E1F6U8
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All DBs
Position
SCLO_1:complement(3667235..3667783)
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AA seq
182 aa
AA seq
DB search
MEAMHRLFVAIRPPLIIRSQLLALMEGVAGARWQKDDQLHLTLRFIGEVDGHVADDLAGL
LGTVRFQPFSIALAGVGRFEKNGRTDALWAGVHPREALSALHRKIDHLCVTMGLHPERRA
YLPHITLARGGRSMAPPGLFMENHASLASAPFQVDGFSLYESHLGREGAIYDPIAHYSAW
NK
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatgcatcgcctgttcgtcgccatccgtccgcctctcatcatccgatcgcag
cttctggcgctgatggagggcgttgcgggcgcgcgttggcagaaggacgatcagttgcat
ctgacccttcgcttcatcggtgaagtggacggacatgttgccgatgatttggccggcctt
ttgggaacggtgcgcttccaacccttttcgatcgcactggccggcgtcggccggttcgaa
aaaaatggcaggaccgacgccttatgggccggggtgcatcctcgcgaagcgctcagcgcc
ttgcaccggaagatcgaccatctttgcgtgacgatggggctgcaccccgaaaggcgcgcc
tatctgccgcacatcacccttgcgcgtggcgggcgttccatggccccgcccggcctcttc
atggaaaaccatgccagcctcgccagtgcgccgttccaggtggacggcttttccctgtat
gagagccatctgggccgcgaaggggcgatctatgatccgatcgcccactattccgcctgg
aacaagtag
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