Sphingobium cloacae: SCLO_1032930
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Entry
SCLO_1032930 CDS
T05301
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCLO_1032930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclo03400
]
SCLO_1032930
Enzymes [BR:
sclo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SCLO_1032930
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SCLO_1032930
DNA repair and recombination proteins [BR:
sclo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SCLO_1032930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BAV66333
UniProt:
A0A1E1F746
LinkDB
All DBs
Position
SCLO_1:3765648..3766460
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTVAGLRSVLEGATLARVEPRRADLRFPIPVDLRQRLTGAIVTSLSRRAKYG
LIGTDRGDTLIFHLGMSGRWRIDPAAIGAHDHLLIETGAGRLLALNDPRRFGSLDLVRSE
AWEAHAPFTRMGPEPLGPDFTPATLARALEGKATSIKAALLDQRIVAGLGNIYVCEALNM
AGIAPTRAAGKIARPRLALLVESIRAVLSAAIVAGGSTLRDYARPDGELGYFSKQWRVYG
REGQPCPCGGTVRRRVDGGRSTFHCPKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaagtcgaaaccaccgtcgccggtctgcgctcagtcctcgaaggc
gcgaccctcgcgcgagtcgagccgcgccgcgccgacctgcgcttccccattcccgtagac
ctgcgccaaaggctgacgggcgcgatcgttaccagcctgtcgcgccgcgccaaatatggc
ctgatcggcaccgaccggggcgacacgctcatcttccatctcggcatgtcgggccgctgg
cggatcgacccggcggcgatcggcgcgcacgaccatctgctgatcgaaacgggggcgggg
cggctgcttgcgctcaacgatccgcgccgcttcggctcgctcgacctggtacgcagcgag
gcgtgggaagcccatgcccccttcacccgcatggggccggagccgctgggaccggacttc
acgcccgccactctggcgcgcgcgctggaggggaaggcgacctcgatcaaggccgcgctg
ctcgaccagaggatcgtcgcgggcctcggcaacatctatgtgtgcgaggcgctgaacatg
gcgggcatcgcgcccactcgcgcggcggggaagatcgcgcggccccgcctcgccctgctg
gtcgaatcgattcgcgcggttctctccgccgccatcgtcgcgggcggctccacgctgcgc
gactatgcgcggcccgatggcgagctgggctatttctcgaagcaatggcgcgtctatggc
cgggaagggcagccatgcccctgcggcggcaccgtccggcggcgcgtggacggcgggcga
tcgaccttccactgcccgaaatgccagaaatag
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