Styela clava (leathery sea squirt): 120325681
Help
Entry
120325681 CDS
T07291
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04137
Mitophagy - animal
sclv04140
Autophagy - animal
sclv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120325681
04137 Mitophagy - animal
120325681
04148 Efferocytosis
120325681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sclv03000
]
120325681
Transcription factors [BR:
sclv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120325681
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
PAS_11
bHLH_HIF1A
PAS
PAS_9
HIF-1a_CTAD
PAS_4
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
120325681
NCBI-ProteinID:
XP_039247709
LinkDB
All DBs
Position
Unknown
AA seq
703 aa
AA seq
DB search
MKIPGNTMLPPTEIHIIQKDKAIDRGARRREKSRDAARTRRQLESDTYNEICKVIPIPNK
QLAQMDRSTVMRLLISFMKLRNIINSADLVKQPEVKQEDLDVIPNDDEYINALNGFIIVL
SHDCDLLYVSTNAKQYIGITSLDLIGQNLFGYTHEGDHGEITNCLKASSEETENCSFFMR
MKSTLTSSGKNVNLKSATYKVLKCDGVVHHSTEPNDTYMVAYCEPIPHPTNIEMVLDHST
FLSRHSLDMKFTVCERVNDLLGYSEEDMIGKSFYDFCNTEDLKTIETLMKKLFRLGQVTT
NHYRMLAKYGGYVWVISQATIINNPRNQQPSYVVCVHYVISDIINSGSIMSLSQLGFFES
KVPKLVKQEAEDLSDDQLGPLDCTDEIFCDSTDSIFCSFAPDGNDDVNLGGDVNSHLDIP
LEVMAQNAPSIGDEIDFSDINFSETFGVESIESLCNNAPSIGDPQFSVPSSQGDFGTLFP
EVNVNIDNINGLKDNYPNRGFRGPQMSPQHTAVTSHSLTPSPPEDPKRKLPDMRFQLLTI
PRSQYQQHMNFQPQKRRVDIDGSVYKANPPEFSPLAKRQKISQCFESYDPMPQDLPAPYK
AQRNVPDATKLLLSGHTQRDKSSLMSLLLQPGNSCDNAYLDRSTDQRESCSDRDCSRPLG
PTSKINTSSLLPVLSVHDCEVNAPINKNLSTMDWMTIASTLGI
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataccagggaataccatgttgcctcccacggaaatacacatcatacagaaagac
aaagctatcgacaggggtgcaagaagacgagaaaaaagccgtgatgcagctagaactcgt
cgacagctagaatctgatacatacaatgagatatgcaaagtcatcccgattccaaacaaa
caattggctcagatggacagatccacagtcatgcgccttctgatcagttttatgaaactg
agaaacattataaattctgcagatttggttaaacaacctgaagtaaagcaagaggatttg
gatgttataccaaatgatgacgaatacatcaatgctttgaatggatttatcatcgtttta
tcccatgactgtgatttactctacgtttctacgaacgcaaaacaatatattggaatcaca
agtcttgatctcattggccaaaatttgtttggttacactcatgaaggtgaccatggcgag
attacaaactgcctgaaagctagctcagaagaaacagaaaattgctcattttttatgaga
atgaagagcaccttgacatcttctggcaaaaatgtaaatctcaagtccgctacatacaag
gttctaaagtgcgatggagtagttcaccattccactgaaccaaatgacacgtacatggtt
gcctattgtgaacctataccacatccaaccaatattgaaatggttttggatcatagtact
tttttaagtcgccacagtcttgacatgaaattcacagtgtgtgaaagggtcaatgatctg
ttaggatattcggaagaagacatgattggaaagtcattctatgatttctgcaacacagaa
gatttgaaaacaatcgaaacattgatgaaaaaattatttcgtctcggccaagttaccaca
aatcactatcggatgttagcgaagtatggtggttatgtctgggtaatttcacaagctaca
atcatcaataatccgaggaatcaacaaccatcatacgtcgtatgtgtgcattatgtcatc
agtgacatcataaacagtggatcgatcatgtcactttctcagctcggcttctttgaatct
aaagttcctaaacttgtcaaacaagaagcagaagacttatctgatgatcagctcggccca
ctagattgtacagatgaaattttctgcgacagcacagactctatattttgcagcttcgct
cctgatggtaacgatgatgtgaatttaggaggtgatgtaaacagtcatttggatattcca
ttggaggtgatggcacagaatgctccctctatcggagatgaaattgacttctctgatatt
aatttctcagaaacatttggagttgaatcgattgaaagcctatgtaacaatgcaccttcc
attggagacccacaattcagtgttccttctagccaaggagattttggcactctcttccca
gaagtgaatgtaaatattgacaatatcaacggtttgaaggacaactatcctaatcgtgga
ttcaggggtcctcaaatgtcccctcagcatacagcagtgacttctcattctctcacacca
tcacctcctgaggatccaaaacggaagttaccagacatgagatttcaattactgactatt
ccgagatcacaatatcaacagcatatgaacttccagccacagaagcgacgagtagacatc
gatgggagcgtgtacaaagcaaacccacccgaatttagtccccttgcaaaaaggcaaaaa
atttcgcaatgttttgagtcttatgacccaatgccacaggacctgcctgcaccctataaa
gctcaacgaaatgttcctgatgctacaaaactacttctcagtggacacactcaaagagac
aaatcatctttgatgtctttattactgcaacctggcaacagttgcgataatgcttatttg
gatcgaagtacggatcagagggagtcgtgcagtgacagggattgctctcgaccccttgga
cccacgtctaagattaacacaagctctttactgcctgttctgtcagtgcacgattgtgaa
gtgaacgcaccaatcaacaaaaatctttccaccatggattggatgacaatcgcatcaaca
ttgggcatatag
DBGET
integrated database retrieval system
