Styela clava (leathery sea squirt): 120325733
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Entry
120325733 CDS
T07291
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04140
Autophagy - animal
sclv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120325733
04148 Efferocytosis
120325733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sclv04131
]
120325733
Membrane trafficking [BR:
sclv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120325733
Hops complex
120325733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_11
zf-RING_2
zf-C3H2C3
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-RING_Vps41
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
120325733
NCBI-ProteinID:
XP_039247799
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MASIFNQYEATISHNESTNPFEASNRSRRPEPVASGYVNARVADETPIFTKSKINFKPQG
PITHLEISNNRLCMIMSGRILLRINLEKPEDQEEVEITRGDDKVYKLFLDQTGSHLLIEM
TSQDTVFFSKTSKKPKSLSKFKGHRIESIGWNRQHIMEASNTGTTGPLLVGTSRGSIMEC
CIESGEDTKFFGGSVDQYLKQLFCLGKGDSRDCSITGLEFNPFPARGGDRPTKYHILATT
RTRLYQFVGRINPNSGEIPVFQNIFTPYDNGPPRFTDLPGGGGWSQLALFYKTKSRTSIP
TQFAWMASPGVYFGDITVPAVEDSTSLHHLSIVANARLISYPDKESDSSNPFAPHTDPAE
EVLGIALTEFHLLVLYSDRVKAICTLNEQVVYEDIYSSRFGSILGLIKDEKKGTIWTFTD
RAVYKYKVFNESRNVWQMFLDDKKFDMARDYCKDNPANLDKVFTRQAEHYFEEGKYNESA
LYYAMTRNSFEEISLKFVRADQQEALRAFLLKKLSSLKPAEKTQTAMLVTWLVELYLNQL
GKLKEENSEDYTHCEDVFKKFLAQENLKDIFLENKKTVYDLLIGHGNIEDYVFFAVLMQD
YERVITHHIQNEDYSAAIEALRKQNNINLYYKFSPILMQYIPEVTVNAWISMGKNLSPKK
LIPSLINCTQGALIDRPQEAIRYLEHCTGTLHCKEPAIHNYLLSLYVKQKPEAVADYIKD
QGDDLEDVCYDVKYALRLCLEGGVKLQKACVEIYNVMTLYEEAVSLALKVDVDLAKSIAN
RPELEEEDEELRKKLWMLIARHVVQEKKDIKRAMQFLQESGDLLKIEDILPFFPDFVTID
HFKDALCESLDEYNKHIKQLKDEMNESTDSAHAIRADIQETRNHHLVVGGSDKCALCNGI
LLSRGFYGFPCSHSFHSDCLWKTVTPYLTPDKQVRADEMQRELNALNQSSSIQDQSGAKD
SKRRRQEIVFELDELIATECAYCGEIAINSIDELFIDPQKYDDVVSSWS
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcttctatattcaatcaatatgaggcaactatttcacataatgaatcaacaaaccca
tttgaggcttcaaacaggagcagaaggccagaaccggttgctagtggatatgtcaatgca
agagttgcagatgagacaccaatattcacaaagagcaagataaatttcaaaccccaagga
cctatcacgcatcttgaaatcagcaacaacagattatgtatgatcatgtcaggaagaatt
ttacttcggatcaatcttgagaaacctgaagatcaggaagaagttgaaatcaccagaggc
gatgacaaagtatacaagttatttctggatcaaacaggatcacatttgttgattgaaatg
acatcacaggatacagttttcttttccaagacatcgaaaaaacctaaatctttgtcaaaa
tttaaaggtcacagaattgaaagtattggttggaataggcagcatattatggaggctagc
aatactggaactactggtcctctactggtgggcaccagtaggggatcaataatggaatgc
tgtatagagtctggggaagatacaaagttttttggaggaagtgtggatcaatatttgaag
cagttattttgtttgggaaaaggagattccagagattgttcaatcactggactcgaattc
aatccatttcctgccagaggtggagatcgtccgaccaaatatcacattcttgctacaact
cgtacaagactttatcaatttgttggaagaattaatccaaacagtggagaaattcctgta
tttcaaaatatattcacaccgtatgacaatggaccaccaagattcactgatctccctggt
ggtggtggatggagtcaacttgcattattttataaaacaaaatctagaacatctattcct
actcagtttgcatggatggcatcacctggtgtatattttggtgacataactgttcctgct
gttgaagattctacatcacttcatcatttatccattgtcgcaaatgcaagattgatttct
taccctgataaagaatctgacagtagcaatccatttgcacctcacactgacccagccgaa
gaagtattaggaatagcattgactgagtttcatcttctcgtcctatattctgatcgtgtt
aaggcaatatgtacgttgaatgaacaagttgtttatgaagatatctattcttcaaggttt
ggatcaatactaggtttgatcaaagatgaaaagaagggaactatatggactttcacagat
cgtgcagtttataaatataaggttttcaatgaatctaggaatgtctggcaaatgtttctt
gatgacaagaaatttgatatggctcgagattattgtaaagataaccctgctaatctggat
aaggttttcaccagacaagcagaacattatttcgaagaaggtaaatacaatgaaagtgca
ttatattatgccatgaccagaaactcatttgaagaaatctcattgaaatttgttcgagct
gatcaacaggaagcactgagagcatttctgctcaaaaaattgagcagcttgaagcctgcc
gagaagactcaaactgctatgcttgtgacatggcttgttgaattatacttgaatcaactt
ggaaaattgaaggaagaaaacagtgaagattacacacattgtgaagatgtatttaaaaaa
tttcttgctcaggaaaatctcaaagatatttttctggaaaataagaagactgtttatgat
cttttaattggtcatggaaatattgaagattatgtctttttcgctgttctcatgcaggat
tatgaaagagtaatcacacatcatatacaaaatgaagattattcagctgccattgaagct
ttgagaaaacaaaataacatcaatctttactacaaattctctcccatattaatgcagtat
attcctgaagtaaccgtgaatgcatggatttcaatgggaaaaaacctttctcctaagaag
cttataccttcacttatcaactgtacacagggtgctctgattgaccgacctcaagaagca
atccggtatcttgaacattgtactggtacattacattgtaaggagcctgcaattcataat
tatttattatcattatatgtgaagcaaaaaccagaagctgtggctgattatatcaaagat
caaggagatgatttagaagatgtatgttatgatgtgaagtatgcattacgtctatgtctt
gaaggaggtgttaaactacagaaagcttgtgttgaaatatataatgttatgacattgtat
gaagaagcagtttcattggccctgaaggttgatgttgatcttgcaaaatcgatcgcaaat
cgaccagagttagaggaagaagatgaagaattgcggaaaaagttatggatgttgatcgcg
agacatgtcgtacaagagaaaaaagatatcaaacgtgcaatgcagtttttacaggagtcc
ggtgatttattgaaaattgaggatattttgccattcttccctgattttgtaacaatcgac
catttcaaagatgcattgtgtgaatcactggatgaatataacaaacatattaaacaattg
aaggatgaaatgaatgagtcaacagacagtgctcatgcaatcagagctgacattcaagaa
acaagaaatcatcatttagttgttggaggttcagataaatgtgctttgtgcaatggaata
ttgttatcgagaggtttttatggatttccatgttcacattcattccacagtgactgctta
tggaaaacggttactccttatttaactcctgataaacaagttcgtgctgatgaaatgcaa
agggaattaaatgctttaaaccaatccagttccattcaagatcaaagtggagctaaagac
agtaaaagacgaagacaagaaattgtttttgagctggatgaattgatcgcaacagagtgt
gcttactgtggtgaaatcgcaatcaattctattgatgagctatttattgatcctcaaaag
tatgatgatgttgtttcaagttggtcgtga
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