Styela clava (leathery sea squirt): 120325967
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Entry
120325967 CDS
T07291
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120325967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120325967
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120325967
Spliceosome [BR:
sclv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120325967
Complex B
120325967
Complex C
U2 SnRNP specific factors
120325967
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
120325967
NCBI-ProteinID:
XP_039248089
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MIKKQEEEESEEEDPLDAFMANIENEVKKQDKKDSVQKRDTIKGVRDDLETMDDEESYYK
YIEENPDAGKMFLDADDPVEYDEDGNPIPGTQKDRKMIDPLPMIYHSEIEYKTFEKNFYV
EHDNIKRLTDSEVSMLRGKLGIQVSGFFPPKPVTSFAHFGFDEKLMKVIRKMEYTSPTPI
QAQGTPSALSGRDVIGIAKTGSGKTAAFVWPMLSHVLDQPVLEEGDGPIALIVAPTRELC
QQIHAEVKRFGKIYGVRSTACYGGGSMWEQQKSLAEGSEIVVATPGRIIDHVQKNYTNMR
RVTYLVFDEADRMFEMGFEYQVRSIANNIRPDRQTLLFSATFKRRIEKLARDILCDPVRI
VQGDVGEANQDVLQIVEVLPNLDAKWHWLTRKIVQLTSQGSLLIFVTKKVNAEDISNKMK
QKGYDVCLLHGDMNQFDRNKVIGEFKKQQVSTMVATDVAARGLDIPSIKNVINYDVARDI
DTHTHRIGRTGRAGEKGTAYTLITSTDVYFAGDLVRNLEGANQRVPEALMNLAVQNARFR
KSRYKHGKGKGFVAKERPGLGSTAPIKRHSSNSSAPTMTTAAFRQASRGRGGVMGGRAAS
MKDYFQNQYKSNFIKSSEPETSWKAGGFKAPLETSSSSGQKRKKKSRWDS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaaaaacaagaagaagaagaaagtgaagaagaagatcctcttgatgcattcatg
gctaacattgaaaatgaggtcaaaaagcaggacaaaaaggattccgtacaaaagcgagat
acaatcaaaggtgtcagagatgatttagagacaatggatgatgaagaatcctattataaa
tatattgaagaaaatcctgatgcagggaaaatgtttctggatgctgatgacccagttgaa
tatgatgaagatggaaatccaatccctggaacacagaaagatagaaagatgattgatcca
ttaccaatgatttatcactctgaaattgagtataaaacttttgagaaaaacttttatgtt
gagcatgataatattaaaagactcacagattcagaagtttccatgttacgagggaaactt
gggatccaagtttccggtttctttccacccaagcctgtaacaagttttgctcatttcgga
tttgatgaaaaattgatgaaagtaataaggaaaatggaatatacttcacccacgccaatt
caagctcaaggcacaccaagtgcattatcaggcagggatgtaattggtattgccaaaact
ggttctggtaaaacagcggcttttgtttggcccatgttgtctcatgtactggatcaacct
gtacttgaagaaggtgatggaccaattgcacttattgtggcaccaacaagagaactttgt
caacagatacatgctgaagtaaaaagatttggcaagatttatggagtaagatcaacagcc
tgttatggtggtggtagtatgtgggaacaacaaaaatcacttgccgaaggatcagagatt
gtagttgcaactcctggtagaattatcgaccatgttcagaagaattacactaacatgcga
agagtaacttacctcgtatttgatgaagcagataggatgtttgaaatgggttttgaatat
caggttcgatcgattgcaaataacataagaccagaccgccaaactctacttttcagtgct
acgtttaagagaagaattgagaaactagcacgagatatattgtgtgacccagttaggata
gttcaaggtgatgttggtgaagcaaatcaagatgtattgcagattgttgaagttttgcct
aatctggatgcaaaatggcactggctcacacgtaaaatcgttcaattaacaagtcaagga
agtttattgatatttgtcacaaagaaggttaatgctgaggatatttcaaataaaatgaag
cagaaaggatatgatgtttgtttactacatggtgatatgaatcaatttgatagaaataaa
gtaattggcgagttcaagaaacagcaggtatcaacaatggtcgccactgatgttgcagca
agaggtctagatattccatcaattaaaaatgtcataaattatgatgttgccagagatata
gacactcatacacacaggatcggacgaactggtcgggcaggagagaagggaacggcatat
acgttaattacatccacggatgtatatttcgctggtgatcttgttagaaatcttgaaggt
gcaaaccagcgtgtacctgaagcattaatgaaccttgctgtacaaaatgcaaggttcagg
aagtcgagatacaaacatgggaaaggaaaaggattcgttgcaaaggagagaccagggtta
ggatcaacagcaccaataaagaggcatagctctaattcaagtgctcctacaatgacaact
gcagctttccgccaggcaagcagaggaagaggaggagttatgggtggaagggcagcttct
atgaaggactattttcagaaccaatacaaaagcaacttcataaaaagttctgagccagaa
acttcatggaaagcaggtggttttaaagcacctctcgaaacaagtagttcttcaggacag
aaaaggaaaaagaagagtcgatgggattcgtga
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