Styela clava (leathery sea squirt): 120326027
Help
Entry
120326027 CDS
T07291
Name
(RefSeq) TATA-box-binding protein 2-like isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120326027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sclv03000
]
120326027
03021 Transcription machinery [BR:
sclv03021
]
120326027
Transcription factors [BR:
sclv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
120326027
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120326027
RNA polymerase III system
TFIIIB
120326027
RNA polymerase I system
SL1/TIF-1B
120326027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-GeneID:
120326027
NCBI-ProteinID:
XP_039248166
LinkDB
All DBs
Position
Unknown
AA seq
348 aa
AA seq
DB search
MNPQRVIPGTIPHGGILQQRSVSGQQRPLISQANPQLSQNQAGSSGLSLPNPSGYNPVSH
HQQPPRGTGMYGSHPMYGAPSHQQNTQPGASNQHFVTLESQRSHRQNEDERSDAQQHRTS
VAMSPAPLSNLQVPTPSALSNYHANTPGYPLSVNVATPMTPRTPADSGVGPPMLQNIVST
VNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSETNSR
LAARKYARVVQKLGFPAKFLDFRIQNMVGSVDVKFPIRLEGLVLTHGQFSSYEPELFPGL
IYRMVKPRIVLLIFVSGKVVLTGAKVRSEIEEAFNNIYPILKGFKKAS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaatccacagcgagtcattccaggcactattccacatggaggaatattacaacaaagg
agtgttagtggacaacaacggcctttgatttctcaggcaaatccacaattatcacaaaat
caggctggaagttctggattaagtttgccaaatccaagtggatataaccctgtgagtcat
caccaacagccaccaagaggtaccggtatgtatggaagccatccgatgtatggagctcca
tcgcatcaacaaaatacacaacctggagcatccaatcaacactttgttactttggaaagt
caaaggtcacatcgtcagaacgaagatgaacgatcagatgctcaacaacacagaacatca
gttgcaatgagtccagcacctttatccaatctccaagtccccactcctagcgcattgagt
aattaccatgcgaacactcctggttatcccttgagtgtgaatgtagcaacaccaatgact
cctcgaactcctgccgattctggggtcggaccaccaatgttacaaaatattgtgtcaact
gtaaatctaggatgtaagttggatctcaagaaaattgccttacatgctagaaatgctgaa
tataacccaaagcgatttgctgcagtaatcatgcgaattcgtgatccgcggacaactgct
ttaatattcagttctggcaagatggtgtgcacaggagctaaaagtgaaactaattcaaga
ttggctgccagaaaatatgcgagagttgtacagaaactgggttttccagcaaaattttta
gattttcgaatacaaaacatggtgggaagtgttgatgtgaagttcccaattcgattggaa
ggcctcgtcttaacacacggacaattctcaagttatgagcctgaactctttcctgggctg
atctacagaatggtgaaacctcgcattgtacttctaatcttcgtatctggcaaagttgta
ctcactggtgcaaaagtgagatcagagatagaggaagctttcaacaacatctacccaatt
ctgaaaggtttcaagaaagcgtcttga
DBGET
integrated database retrieval system
