Styela clava (leathery sea squirt): 120326132
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Entry
120326132 CDS
T07291
Name
(RefSeq) transcription elongation factor SPT5-like isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120326132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120326132
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120326132
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120326132
RNA polymerase I system
120326132
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120326132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
Spt5-NGN
KOW5_SPT5
KOW7_SPT5
KOW6_SPT5
KOWx_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
DUF3912
S1CSD-TOTE-1
Motif
Other DBs
NCBI-GeneID:
120326132
NCBI-ProteinID:
XP_039248300
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MSDSDGSASEFSDDEDEGDYNQNRRTNQFNDSEAEEAGENEVSDDEPGSEPGSDEAESLD
DKDESRGREDEYDEEEEEEERPSKRPRHGGFIIDEADVDEGDEDEEEWEEGAEDILDRDE
EQEASNAENLQETMENEMSGARRLQNFLSNEGAEELGEYYMRKYASGSSRKAGYGGEYEM
PDEISQQQLLPDVKDPNLWTVKCKIGEEKATVLQLMRKFVAMQYGETPLQIKSVVAPEGL
KGYIYIESFKQTHVKQAIEGIGNLRLGYYKQQMVPTKEMPDVMKVLKEVTNLKPKMWVRL
KKGIFKDDLAQVDYVEPSQNQVSLKLIPRIDYTRLRGVYRGTDSENREKRKLYKKPPQKL
FDVDAVRAIGGEVTTDADFLIFEGNRFSRKGFLYKNFSLSAITVDGVRPTLSELEKFEEQ
PEGVDIELVAESTTKAEKEHSFAPGDNVEVCEGELINLQGRVISVKGNKITIMPKHEDLN
DPLEFPVHELRKHFQMGDHVKVIAGRYDGDTGLIVRVEERMVVLFSDLTMHEMKVLPRDL
QLCADVSSGVDSVGKFQFGDLVMIDNQTVGVIVRLERENFQVLSMHGKLKQMKHQAVTRR
RDTRNAVALDAEQNSIQVKDIVKVIDGAHSGREGEIKHLYRGYAFLMSKKMIENGGIFVV
RTRQCVLAGGSRPSAMGIGIFAPQSPRISSPARNDSGGGGGGNFGGGGGRGRGRGQRDTS
IIGQTVRVRQGPYKGHIGVVKDATESTARIELHSSCQTISVDRSRLSTMDKRAGAGGRST
AYQRTPMQGSQTPMYGTAGSRTPMYGSQTPLHDGSRTPHYGAQTPQHDGSRTPRESGSAW
DPTNANTPARTSEFDYDYESASPAPFGGATPNPQTPGYASDVPSPQAPYSNPPQTPGSYA
GDRTYSPYGAPSPSPQAYQATPSPAGSGYQPTSPGYNSSGSSYQPSPSPQGYQPSPGGSS
YQTPSPGNFQATPSPLGYQPTPSPADYTSPLTPGGGYSTPGSVGSALDHAINTDWQTVDI
VVMVKDSHDEGQLVGKLGVVRSITGGMCNAYIPEIDRTISVAGGNLEPVVPGKNDKVKVI
LGEDREMTGELISIDDKDGIVRMDVDKQLKILQLRFLGKIATTKEGGGKGDDVDSDDDDE
D
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatagtgatggaagtgcaagtgagttttctgatgatgaagatgaaggagattat
aatcaaaatagacgaaccaatcaatttaatgacagtgaagctgaggaagcgggtgaaaat
gaagtgagtgatgatgaaccaggatcagaaccaggaagtgatgaagctgaaagtctcgat
gataaagatgaaagtagaggaagagaggatgaatatgatgaagaagaagaggaagaagaa
cgaccttcaaaacgtcctcgacatggaggctttattattgacgaagctgatgttgacgaa
ggagacgaggacgaggaagaatgggaggaaggagctgaagatattctggatagagatgag
gagcaagaagcatccaatgcagaaaatttgcaagaaaccatggaaaatgaaatgtctggg
gcaagaagacttcagaactttctcagtaatgaaggggcagaagagcttggtgaatattac
atgaggaaatatgcaagtggaagcagtagaaaagcaggttatggaggagaatatgaaatg
cctgatgaaatcagtcaacaacagttactgcctgatgtcaaagatccaaacttatggacg
gtcaaatgtaagatcggagaagaaaaagctacagtacttcaactgatgagaaaatttgtg
gcaatgcaatacggggaaacacctttgcagatcaagtccgtggtagcacctgagggtctg
aagggttatatttacattgaatcattcaagcaaactcatgtaaaacaagcaattgaagga
attggaaacttgagacttggatattataaacaacagatggttcctacaaaagaaatgcct
gatgttatgaaagttttgaaagaagttacaaatttaaaacctaaaatgtgggttcgatta
aaaaagggaattttcaaggatgatttagcgcaggttgattatgttgagccaagtcagaat
caagtttcattgaagttaattcctcgcattgattacacaagattacgaggtgtttatcga
ggtacagattctgaaaatagagaaaaaagaaaattatacaagaaacctccacaaaagttg
tttgatgttgatgctgttagggccattggtggtgaagtgacaacagatgctgattttcta
atatttgaaggaaataggttcagcagaaaaggttttctatacaagaacttctccttgtct
gcaattacagtagatggagtcagaccaacattgtcagaacttgagaaatttgaggaacaa
cctgaaggtgttgatattgaattggtggctgaaagtacaactaaagctgagaaagaacat
agttttgcccctggtgataatgtggaagtttgcgaaggagaactcatcaatctacaagga
agagttatcagtgtaaaaggaaataaaataacaattatgcccaagcatgaagatctaaat
gatcctctagaatttccagttcacgaattgagaaaacatttccaaatgggagatcatgtt
aaagttattgcaggaagatatgatggagatacaggtttaatagtgagagttgaagaacgt
atggttgttctattctctgatctaacaatgcatgaaatgaaagtattgccgagagatttg
cagttgtgtgctgatgttagttctggtgtagactctgtaggaaagttccaatttggtgat
ctggtcatgattgataatcagacagttggggtgattgtcagattggagagagaaaatttt
caagttttgtcaatgcatggtaaactcaaacagatgaaacatcaggcagtaacgagacga
cgtgacacaagaaatgctgttgctctcgacgcagaacaaaacagcatacaagttaaagat
attgtcaaagttattgatggtgcacactcgggcagagaaggtgaaatcaagcatttgtac
cggggatatgcatttcttatgtcaaagaaaatgattgaaaatggtggaatatttgttgta
agaacaaggcaatgtgttctggctggtggatcaaggccaagtgcgatgggaattggtata
tttgcaccacaaagtccaagaataagcagtcctgctagaaacgattcaggaggaggaggg
ggtgggaattttggtggtggaggaggacgcggcagaggaagaggacaaagagatacaagc
attattggtcaaacagtacgagtgcgacaaggaccctataaaggacatatcggtgtcgtt
aaagatgccactgaatctactgccaggattgaattacattccagttgccaaactatatct
gttgacagaagcagactttcaacaatggataaaagagcaggagctggaggacgaagcact
gcgtaccagagaactccaatgcagggatcacaaactccaatgtatggaactgctggatct
cgtactcctatgtatggatcacaaactccacttcatgatgggagcagaacgcctcattat
ggcgctcaaacaccacaacatgatggcagtagaactccacgagagtctggaagtgcctgg
gatcctacaaatgcaaacactcctgctcgtacttctgaatttgactatgattatgaatct
gcttctcctgcgccatttggaggggcgacacccaacccacaaaccccaggctatgcatca
gatgttccctcgcctcaagctccatactctaaccccccacaaaccccgggaagttacgcg
ggtgataggacatactcaccatatggagctccgtcaccatctccccaagcttatcaagct
actccaagtccagcaggttcagggtatcagccaacaagtccaggatacaattcatccgga
agttcttatcaaccaagtccatctccacaaggatatcagccttccccaggaggttcaagt
tatcaaacaccatctccaggaaatttccaggctacgccgtcaccactcggttaccagcca
actccaagtcccgctgattacacgagtccgttgacacctggaggtggttactcaacaccc
ggatcagttgggtctgctttggatcatgcaataaatacagactggcaaactgtggacatt
gttgtcatggtaaaagatagtcatgatgaaggccaactcgttggaaaactgggcgtcgtc
aggagtataacaggtggaatgtgcaatgcatacattccagagattgatcgaactatcagt
gttgcaggaggaaatttggaaccagttgtccctgggaaaaatgataaggttaaagttatt
ctgggagaagacagagaaatgactggagagttgataagtattgatgacaaggatggaatt
gtacggatggatgttgacaaacagttgaagattcttcaacttcgttttcttggcaaaatc
gccacgacaaaggaaggtggcggaaaaggagacgacgtggattcagacgatgatgatgaa
gactga
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integrated database retrieval system
