Styela clava (leathery sea squirt): 120326151
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Entry
120326151 CDS
T07291
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120326151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120326151
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120326151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
120326151
NCBI-ProteinID:
XP_039248324
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MSTLQTKFTLDDLQERQLATYLKSFPPSSDATFVVFDHEDFYTAHDSNAVFAAKEIFKST
AILKYIGKGEKKVSTVYLSQLNLESLVRDLLLVRHYRIEIYRNKTKTGSKWELSCKASPG
NLTQIEDLLFKNNELKATSSGVIAVKQFQSNSGGRNVGIGFIDTITREIQVAEFEDNEVF
SNLESTIIQLGARECLLQKLDQTSECTKLAEVVKRSGVLMSERPKKEFQSKDLVQDLGRI
LKKNKKTGETLNATVAREISEKDGAACALASCINYLELLNNEDNFDQYIFKTYDLSQYMR
LDRSAYSALNLFSNESSSYSVGGMKKSADSLYNLLDQCKTQQGKRLLSQWIKQPLLDMNH
VKERLNLVEAFVRDTTLRLTIYGEYLRSFPDLCRMSKKFHRKNASLQDCYKVYQGLKSIP
MLCECLARNEDQHASLLKEFFTTPLHELSLDFAKFTEMVETTLDFKMIEQHQFRVKADFD
PELLELQEKMDRNKLKMDKCFNEAAQDLQLEKGKGIKLESSSQLGYFFRVTCKEEKKLRN
KKSYYTIDTNKAGVRFVTDKMSQLSEIYQECQKLYEQQQLAIVNEIVRIAAGYSEPMLLL
GDLIAKLDVLISFAQVSVNAPCPFVKPEVYSPDENKGIVLKECRHPCLERQDDVDFIPND
IEFNRESYSFLIITGPNMGGKSTYIRQAGMVVLMAQIGCFTPCSEAHVTLVDAILARVGA
GDCQVRGVSTFMAEMLETSSILRSATQNSLVIIDELGRGTSTYDGFGLAWAISHHIATKI
GSYCMFATHFHELTALADEVSSVANLHVTALTGEVQNDAPTLTMLYQVKRGVCDQSFGIH
VAECVDFPKHVIESAKRKAAELEDYNVILPHDDMMENDPDTARKKRKIKQEGEEIIIKFL
QAAKEVDWKSMSSSEIGVKLEELKKSMIPSDNQYISTILKNVSDVS
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactttgcagactaaatttacattggatgacttgcaagagaggcagttagctaca
tacttgaaaagctttcccccttcatcagatgcaacttttgttgtttttgaccatgaagat
ttttataccgcacatgatagcaatgctgtgtttgctgcaaaagaaatatttaagagcact
gccatactgaaatatataggaaaaggtgaaaagaaggtttcaacagtttatctcagccaa
ttaaaccttgaatcattagtgagagatttactgttggttcggcattatagaattgagatt
tatcgaaacaaaactaaaactggatcaaagtgggaactttcgtgcaaagcatcaccaggc
aatctgacacaaattgaagatttactgttcaaaaataatgaacttaaagctacaagttct
ggtgtgattgcagtcaaacaatttcaatcaaactcaggtggcagaaatgttggaattggg
ttcattgacacaatcactagagaaattcaggtcgcagaatttgaagacaatgaagttttt
tctaaccttgagtcaacaattattcagttaggtgccagggagtgtttattgcaaaagctg
gatcaaacttcagaatgtacaaaacttgcggaagttgtgaaaagaagtggagttttaatg
tcagaaagaccaaaaaaagagtttcaatctaaagatctagttcaagatttggggaggatt
ttaaaaaagaacaagaaaactggagaaacactgaatgccacggtagccagagaaatatct
gagaaagatggtgctgcttgtgctcttgcttcgtgcatcaattatctggaacttctgaac
aatgaagataactttgaccaatacatatttaaaacttatgatttatcacagtacatgagg
ttggatagatcagcatattcagctctcaatttattttccaatgaaagttcttcgtactcg
gttgggggaatgaaaaaatctgctgattcattatataatctacttgatcagtgcaagact
caacagggcaaaagactgttaagccaatggatcaaacaaccgttacttgatatgaatcat
gtgaaagaaagattgaatttagtagaagcttttgttcgtgacacaacattgcgtttaaca
atttatggggaatatctaagaagttttccagatctttgcagaatgtctaaaaagttccac
agaaagaatgcatcacttcaggattgctataaagtttatcagggtctcaaatcaattcct
atgttgtgtgaatgtctagcacgcaatgaagatcaacacgcaagcttactaaaggaattt
tttacaacacctttgcatgaactgtcattggattttgcaaaatttactgaaatggtagaa
acaactttggatttcaaaatgattgagcaacatcagtttcgggtgaaagcagattttgat
ccagaattgctggaactgcaggagaaaatggatcgaaacaagttgaagatggacaaatgt
ttcaatgaagctgcacaagatttacaactggaaaaaggaaaaggcattaaattggaatcc
agttctcagctgggttatttcttccgggtcacatgtaaggaagaaaaaaaattgagaaat
aagaagagttattatactattgacacaaacaaagcaggtgtcaggtttgttacagataag
atgagtcaattgagtgaaatatatcaagaatgtcagaagttatatgaacaacaacaactt
gctattgtcaatgaaatcgtaagaattgctgctggttattcagaacctatgcttcttctt
ggcgacctcatagcaaaactggatgttttgataagcttcgctcaggtttcagtgaatgct
ccatgtccttttgttaaaccagaagtgtattcaccagatgaaaacaaaggaatagtattg
aaagaatgcagacatccatgcttggaaagacaagatgatgtcgattttataccaaatgat
attgaattcaatcgagaaagctattcatttttgatcataaccggtcctaacatgggaggc
aaatctacatacataaggcaagctggaatggtagttcttatggctcagattggttgtttt
acaccatgcagcgaagcacatgttacattagtagatgcaattctagccagagtaggagct
ggagattgtcaagtgcgaggtgtatcaacgttcatggccgagatgttagagacttcatcc
atactcagatctgctactcagaattcactcgtaataatcgatgaattaggtcgtggaact
tctacttacgatggctttggtttggcttgggcaatttcacatcacatagcaaccaagatt
ggttcatattgtatgtttgccacacactttcacgaactaactgcattagctgatgaagta
tcttctgtagcaaatcttcatgttactgctttaacaggagaagttcaaaatgatgcacca
actctcacaatgttgtaccaagtaaaacgaggtgtgtgtgatcaaagttttggaatacat
gtggcagaatgtgtggattttcccaaacatgttattgaatctgctaaaaggaaagctgcg
gaattggaagattacaatgtgattttacctcatgatgatatgatggagaatgatcctgac
actgccaggaagaagagaaaaattaaacaggagggtgaggagataatcataaagtttttg
caagcggcaaaagaagttgactggaagtcgatgtccagcagtgaaattggtgtcaaactt
gaagaactgaagaaatcaatgattccatcagacaatcaatatatttccacaattcttaag
aacgtgtctgatgtctcataa
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