Styela clava (leathery sea squirt): 120326438
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Entry
120326438 CDS
T07291
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120326438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120326438
Enzymes [BR:
sclv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120326438
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120326438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_1
Motif
Other DBs
NCBI-GeneID:
120326438
NCBI-ProteinID:
XP_039248663
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MDITRHNFKETYEIVEKAVSEANFVAVDGEFSGVTNSTFNLTNYDSPEERYHKLKHNVAD
FLLMQFGLVTFKWNPEKEEYIAEAFNFYIFPFRSSGSGIPDRIFSCQGSSIDFLTAQNFD
FNKVFHSGISYLRSAEEASMRAALNEKHIMRLQNYKSPRKSLENNGNSTSTDTSPAGSPT
VISDPKTQAFVDGIKAKIETFLKTSNEGGSLELEPCNSYLRKILYETIPTMFPEPLALEA
HVNEKTKQRYLVVLRVGSPEAMQQRKDQARAKDEALLQDSIGFSRIIQLLTRSQKLLIGH
NMLLDLMFTTQQFVRPLPQTLEEFKSLLSCTFPKIVDTKLMGSMLPFRELIFSTALGEMH
NRLASHPFCIPDIIPPDKYDPSKSDHNMDINLHEAAYDAYITGVSFLSMLNFLSSFRKQG
KSQALANPSSDVISPYMNKVFLMRSPDIPYLNLAGNDLTPSRAHVFHVQFPPTWRANDVR
MLFGPIGSAVYISWINDVQCFVGLHDKSQAKQVKKLLIKPGGVDSNLYTVRTYEEYQRDI
AGQIFLTPTTFKHSYNPATYSRNKVWRPNNGTTAVSTTSGTSIVQPTPSSGTDTPKSLIA
NRKRSGEESTAVKPLSVRRISSTSNCFNSLDIDEPDVKRKRSQDSATPIDVDASTSIART
DLPSLLISDTDPKDEEMDKDSVKEPSVSFEVPSNWG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggatattaccaggcataatttcaaggaaacgtatgaaattgttgaaaaagcagtttca
gaagcaaattttgttgccgtggatggtgaattttctggagttactaattcaacgttcaat
ttgactaattacgattcacctgaagaaagatatcacaagttaaagcataatgtcgctgat
tttttacttatgcagtttggtttggtaacctttaagtggaaccctgaaaaagaggaatat
atcgcggaagcattcaatttttatatttttccttttcgatcttctggatcaggaattcct
gacagaatattttcgtgccaaggatcaagtatagattttcttactgcgcaaaattttgat
ttcaataaagtatttcacagtggaatttcatatctaagatcagcagaagaagcatcaatg
cgtgcagcgttaaatgaaaaacacatcatgagattacagaattataaatcaccaagaaaa
agtttggaaaacaatggaaactcgacatcgacagacacaagtcccgcgggaagtccaact
gttatatctgatcccaaaacacaagcatttgttgatggaataaaagccaaaattgaaaca
ttcttgaaaacatcaaatgaaggcggttcattagaattagaaccttgtaacagttattta
agaaagattctgtatgaaaccattccaacaatgtttcctgaacctcttgcattagaagct
cacgttaatgaaaaaacaaaacaaaggtatctcgtagttttgcgtgttggaagtccagaa
gctatgcaacaacggaaagatcaagcgagagcaaaggatgaagcattattacaagactct
attggtttctctcgaattatccaacttcttactcgaagccagaaattattgattggacat
aatatgttattggatttgatgttcacgactcagcaatttgttcgacctttaccgcaaact
ttagaagaatttaagtcattattaagttgcacttttccaaaaattgttgatacaaaactc
atgggaagtatgctgccatttcgggaattaattttttcaactgcacttggtgaaatgcac
aacaggttggcaagtcatcctttctgtattcctgacataattcctcccgacaagtatgat
ccttctaaatcagatcataacatggacataaatttacatgaagcggcatatgatgcatat
attacaggtgtttcatttttgtcgatgctcaatttcttgtcatcatttagaaaacaggga
aaatctcaagctcttgctaatccatcatctgatgttatttcaccatacatgaataaggtt
tttctgatgaggagtccagacatcccatatctgaacttagcaggtaatgatttaacacca
tctcgagcccatgtttttcatgtacaatttccaccaacctggcgagctaacgatgttcga
atgttgtttggtccaatcggaagtgctgtctatatatcttggatcaatgatgtgcaatgt
tttgttggacttcatgacaaatcacaggcaaaacaggtgaagaaacttctgatcaagcct
ggaggtgtggattcaaatctttatacagttcgaacttatgaagaataccagcgcgatatt
gctggtcaaatattcttgaccccaaccacattcaaacatagctacaatcctgcaacatac
tcaagaaataaggtgtggcgtcccaacaatggtacaactgcagtttccactacaagtggt
accagcattgtacagccaactcccagctcagggactgatactccaaaatcactaatcgca
aatcgtaaaagatccggtgaggaatcaactgcagtaaaacctctgtcagttcgaagaatc
tcatcaacatctaattgtttcaactcattagacattgatgagccagatgtaaagagaaag
cgctctcaagactctgctacacctattgatgtggatgcatccacttcaattgcaaggact
gatctcccatcactgctgatttcagacactgatccaaaagatgaagaaatggataaggat
tcagttaaggagccctctgttagttttgaagttccaagcaactggggctga
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