Styela clava (leathery sea squirt): 120327664
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Entry
120327664 CDS
T07291
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120327664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120327664
Enzymes [BR:
sclv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120327664
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
120327664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120327664
NCBI-ProteinID:
XP_039249932
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MVKEQFREADVAKKISDVSFSIQTPDEMRKYSHIHCVSKNLYQQDQSHTAVEYGVLDRRM
GTSRKDKNCETCGQSLADCVGHYGFVDLELPCFHAGYFRATICILQMICKDCSHVMLEDS
DRMHFLNSLKKPGLTYLQRRVLRKKVIVKTKKVHFCQYCGALNGTVKKCGMLKIVHEKYK
SPTKKSIDPCITEFFQSFEAAKKHNKDLDNLVNRAQEDLNPLIVKDLFEKIPDEDIPLLM
MNRDVGRPQDMIVTRLLVPPLCIRPSVINDLKSGTNEDDLTMKLTEILFLNNVIEKHRAS
GAKSQMIMEDWDFLQLQCALYMNSELSGIPFNMKPQKPTRGFVQRLKGKQGRFRGNLSGK
RVDFSGRTVISPDPNLRIDQVGVPELVAKILTYPERVTKSNIELMRKLVINGSDKHPGAN
FLQQRHTNMKRFLKYGNRQKIAAELRYGDIVERHLMDGDVVLFNRQPSLHKLSIMSHFAK
VVPHRTFRFNECVCNPYNADFDGDEMNLHLPQTEEAKAEALILMGTKSNLVTPRNGELLI
AAIQDFITAAYLLTRKEVFFSRAQAARIISSILAYRDRRIKIDLPPPVILKPCSLWTGKQ
IFGLILRPNKECPIKANLRTKGKQYSGSGEDLCVNDSYVVIYNSQLLAGAMDKSTLGSGS
KNNIFYILLRDYGEQAAADAMWRLARVCPVYLSNRGFSIGIGDVTPGEGLLAAKRDLLED
GYKKCDEYISALAQGKLQSQPGCTPEQTLEAVILKELSVIRDHAGKACLRELHRSNTPLT
MAVCGSKGSFINISQMIACVGQQAISGNRVPNGFEDRSLPHFEKHSKDPAARGFVENSFY
SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCGHYDLTVRSSTRDIIQ
FIYGGDGLDPTDMEGKDQPLDFNRVLEYVKTKHSDQNSSTLSSSLLCSQAEKIILDSKYS
SLSDIFKSDLTNYLKGIAKRIADTRTRYGVNDNGTTRPPVLYQLDRITENQLNIFIEVCS
KKYMKARLEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKN
ISTPIITAYLRNDTDSDFARKIKGRIERTTLGEISEYFEEVYQTDDCFLIIKLSMTRVRL
LKLEVNADTVRYNLCTSHLPIKPNQVIIRSKDVITIHPTDTNKGSMYHTMQLLKDMVTDV
VVQGLVGVSRAVIHIDEKQDNKKYKLLVEGNDLSGVIGTPGIYGEKTTSNNTMEVEKCLG
IEAARQTIINEVQYTMVNHGMSIDRRHLMLLADLMTYKGEVLGITRYGLARMKESVLMLA
SFEKTADHLFDASYYGQSDSISGVSECIIMGIPMSIGSGIFKLLHKTQMSSKPQKRKFIF
DNPELHTPLPIA
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggttaaagaacagtttcgagaagccgatgtggcgaagaaaatcagcgatgtcagtttc
agcattcaaacacctgatgagatgcgaaaatattcacatattcattgtgtgagcaaaaac
ttgtatcaacaagatcagtcccacactgcagttgaatatggtgtattagatcgtcgcatg
ggtacaagcagaaaagacaaaaattgtgaaacatgcggtcagagtttggcagattgtgtt
gggcattatggttttgttgaccttgaacttccatgctttcatgctggatattttcgagct
actatttgtattttacaaatgatatgtaaagactgtagtcatgtgatgcttgaagattct
gatagaatgcactttctgaattctttaaaaaaacctggtttaacttacttgcaacgacgt
gttcttcgcaaaaaagttattgtgaaaaccaaaaaagtgcatttttgtcagtattgtggt
gcactaaatggtacagtgaaaaaatgtgggatgcttaaaattgtgcatgaaaaatataag
agcccaactaaaaagtctattgacccttgcatcacagaatttttccaatcatttgaagca
gcaaagaaacataacaaagatcttgacaatcttgttaatagagctcaagaagatttgaac
ccactgattgtaaaagacctttttgaaaaaattccagatgaagatatcccattattaatg
atgaatcgagatgttggtagaccacaagatatgatagtaactagacttcttgtcccacca
ttgtgtatcagaccttctgtcatcaacgatctcaagtcaggtacaaatgaagacgattta
acaatgaaacttactgagatcttgttcttaaataatgttatcgaaaaacatcgggcctct
ggagcaaagtctcaaatgataatggaggattgggattttctgcaactgcagtgtgctttg
tatatgaatagtgagttatctggcattccatttaacatgaaaccacaaaaacccactcgt
ggttttgtacagcgtctcaagggcaaacagggaagatttcgtggtaatttgtctggaaag
cgtgtagatttttcgggtcgaactgtaatttctcctgacccaaatttgaggattgatcaa
gttggtgttcctgaacttgtcgcaaaaattttaacttatcctgaaagagtgactaaaagt
aatattgaattgatgcggaaacttgttataaatggcagcgacaaacatccaggagcaaat
tttcttcagcaaagacatacaaacatgaaaagatttttgaagtatggtaacagacaaaag
attgcagcagaactgaggtatggcgatattgttgagaggcatttaatggatggagatgta
gttttattcaatcgtcagccgtctctccacaaacttagcatcatgtctcactttgcaaaa
gttgtgccgcatagaactttccgcttcaatgaatgtgtatgcaatccttacaatgctgac
tttgatggagatgaaatgaatctgcatcttcctcagacagaagaagcaaaagcagaagct
ttgattttgatgggaacgaagagcaatttagtcacgcctcgtaatggtgaacttctcatt
gctgctatacaagatttcatcactgcagcttatctacttacacgaaaagaagtctttttt
tcaagagctcaggctgcaagaattatttcttctatacttgcatatcgtgatcgaagaata
aaaattgatcttcctccaccagtaatattgaagccttgttcattgtggacaggcaagcaa
atatttggattgattcttcgacctaacaaggaatgtccaattaaagcaaatttgagaaca
aaaggaaagcaatattctggtagcggagaagatctttgtgttaatgactcttatgttgta
atctataactcacagctcttagctggagcgatggacaagtcgacactcggatctggctcg
aaaaacaacattttttatattcttctaagagattatggggagcaagccgcagctgatgca
atgtggaggttagcgagagtttgcccagtgtacttaagcaacagaggtttttcaattgga
ataggtgatgtcacacccggggaagggctacttgcagcaaagagagatttattggaagat
ggatataagaaatgtgatgaatatatctctgcattagcacaaggcaagcttcaatctcaa
cctggatgtacaccggaacaaaccttggaggccgtcatattaaaggaattatctgttatt
cgagatcatgctggaaaagcatgtctacgggaacttcatcgaagcaatactccactcact
atggcagtttgtggctcaaaaggttcatttattaatatttctcaaatgattgcttgtgtt
ggtcagcaagctattagtggtaatagagttccaaatggatttgaagatcgttcactccca
catttcgagaaacattctaaagatccagctgcgagaggatttgttgagaatagtttttat
tccggacttactccaactgaatttttttttcacactatgggaggcagagaaggcctggtt
gatacagcagttaagacagctgagaccggatacatgcaaagaagattggtgaaatcactg
gaagatttatgtggacattatgatttaactgtcagatcttctaccagagatatcattcag
tttatttatggaggagatggcttggatccaactgacatggaagggaaagatcaacctctc
gactttaatcgtgtgcttgagtatgtcaaaacgaaacattctgatcaaaatagttcaacc
ttaagcagctcattgctatgttctcaagctgaaaaaataattttagattctaaatattca
tctctaagtgatattttcaaatccgatttgacaaattatctcaaaggtatcgcaaaaaga
attgcagatacaagaactagatatggtgtgaatgacaacggaacaactcgaccacctgtc
ttgtatcagttagatagaattactgaaaatcagttaaatattttcatcgaggtctgttct
aagaaatatatgaaagcaaggctggagcctgggacagcagttggtgcgttgtgtgcacaa
agtataggtgaacccggtacacaaatgactttaaaaactttccattttgctggtgttgca
tctatgaatatcacactaggcgttcctcgtatcaaggaaatcattaatgcttcaaaaaat
attagtaccccaatcataactgcatatttacgaaatgatactgattcggactttgcgaga
aagattaaaggtcgtatcgaacgaacaacacttggtgaaattagtgaatattttgaagaa
gtttatcagactgatgattgctttctaataataaagctatctatgacaagagtacggctg
ttgaaactggaagtaaatgcagacactgtacgatacaatttatgtacatcacatcttccc
atcaaaccaaatcaagttataattcgaagcaaagatgtgatcacaattcatcccactgac
acgaacaagggcagcatgtatcacaccatgcaattgttaaaagatatggtaacagatgta
gttgtacaaggtttagtaggtgtgtcaagggcagtaatccacattgatgaaaaacaggat
aataaaaaatacaaacttctcgtagaaggaaatgatctatctggcgttatcggaactcct
ggaatttatggagaaaaaacaacatcaaataatacaatggaagttgaaaaatgtcttgga
atcgaagctgctcgtcaaactatcatcaatgaagtgcaatatacaatggtcaatcatggc
atgagcattgatcgcagacaccttatgcttttggctgatcttatgacatacaaaggagaa
gttcttgggattacacgatatggccttgctcgtatgaaggaaagtgtgcttatgctggca
tcgtttgaaaaaactgctgatcatctttttgatgcttcatactatggccaatcagattca
atttcaggggtttcagaatgtattattatgggaataccaatgagtattgggtctggaata
tttaagctgctccataagacacaaatgagttccaaacctcagaagaggaagtttatattc
gataatcctgagcttcacactccacttcctattgcatag
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integrated database retrieval system
