Styela clava (leathery sea squirt): 120328520
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Entry
120328520 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120328520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120328520
03041 Spliceosome [BR:
sclv03041
]
120328520
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120328520
Spliceosome [BR:
sclv03041
]
Complex B
Other components
Prp19-related factors
120328520
Complex C
120328520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_15
TPR_8
TPR_2
ARM_TT21
RPN7
Mad3_BUB1_I
Nic96
TPR_10
NRDE-2
DHR-2_Lobe_A
AbiH
Motif
Other DBs
NCBI-GeneID:
120328520
NCBI-ProteinID:
XP_039250970
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MPSVDELVLEEDDLPYEEEILRNPFSVKCWLRYIDHKENAPYKQLNMVYERALKELPGSY
KLWYNYLRIRRSQVKGRCPTDSMFEEVNNAHERALVFMHKMPRIWIDYCKFLVDQRCLTR
TRRTFDRCLEALPVTQHDRIWPLYIEFVKKYPIHETAVRVFRRMLKLIPEESEDYVEYLI
SIDRYDEAATKLAEIVNDESFASKHGKTNHLLWHELCELISKNPDKVHSLKVEAIIRGGL
KRFTDQLGQLWCALADYYIRSGLFERAREIYEEAIETVTTVRDFTQIFDAYAQFEESVIS
SKMEEAAEEEQNEEDDIDIELRLARFEHLITRRPLLLNSVLLRQNPHNVNEWLKRVELYE
DNLAQVINTYTEAIQTIEIPKSVGKISNLWVSFAKFYEKHDQIDDARTIFGKAVLVSYKG
VEDLATVWCEWAEMELRHENFDGAINLMKRATAMPPKRAGYFDHTEPVQNRVYKSLKLWS
MYADLEESFGTFHTCKAVYDRILDLRISTPQIIINYGMFLEDNRYFEEAFRLYERGVGMF
KWAKRFRSWNTYLTKFIARYGGKKLERARDLFEQALDGCPPKFAKNLYLLYAKLEEEHGL
SRHAMAVYEKATKAVLPEEKYDMFNIYIKRVAEIYGVTHTRPIYQRAIESLEDAQARDVC
LRFADLEQKLGEIDRARAIYAFCSQMCDPRTTAEFWQTWKTFEVKHGNEDTVREMLRIKR
SVQATYNTQVNFMSAQMLAAASNTTGTSADLAPGDPGTDEMKLLEAKAQAASAQKEKVQP
KKGILFVRSDNTQNPASEQVVTENPDEIDLDASDDEEALPDISIKKRAVPDQVFGGIKRA
SDDEE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccatctgtggatgagctggtcttggaagaagatgacctaccttatgaagaagagata
ttgcgcaatccattctctgtcaaatgctggctgaggtacattgatcacaaagaaaatgca
ccttataagcagctcaacatggtctatgagagagctttgaaagaacttcctggaagctat
aagttatggtacaactatctacgaatcagacgaagccaggttaaaggtcgatgtcctacg
gactcaatgtttgaagaagttaataacgcacatgaacgagcgttagtttttatgcacaaa
atgccccgaatttggatagattattgtaaatttcttgtggatcaaagatgtttgacgaga
acgcgtcgtacttttgatcgctgccttgaagctcttccagtgacgcagcatgatcggatt
tggccgttgtatattgaatttgtgaaaaaatatcccattcatgaaacggcggttcgagtt
tttcgtagaatgctgaaactcattccagaagaaagtgaagactatgtggaatatttaata
tcgattgatcgttacgatgaggcagctacaaaacttgcggaaattgttaacgacgagagt
tttgcgtcgaaacatggaaagacaaatcatttactttggcatgagttatgtgaactcatt
tcgaagaatcctgataaagtacattcgctaaaagtcgaggcaattattcgtggtggttta
aaacgtttcactgaccaattaggacaactttggtgcgctttagctgattattacatcaga
agcggactttttgaacgagcgagagagatttacgaagaagcaatagaaactgtgaccact
gtccgtgattttacacaaattttcgatgcgtacgctcaatttgaagagtccgttattagt
tcgaaaatggaagaggcggctgaagaggaacagaatgaagaagatgacattgatattgaa
ttacgactcgcaaggttcgaacatttaattacgagacgtccattacttctcaatagcgtc
ctcttgaggcagaatccacacaatgtaaacgaatggcttaaacgagtcgagctttacgaa
gataacttagcacaggtcatcaacacatacacagaagctatacagacaatagaaatacca
aaatctgttggaaagatttctaatctctgggtttccttcgctaaattctatgaaaagcat
gatcaaattgacgacgctcgtacaatttttggaaaagcggtcctcgtgtcttacaaaggc
gttgaagatctggccaccgtgtggtgtgagtgggctgaaatggaactacgacacgaaaat
tttgatggcgcaatcaatttaatgaaacgagcgactgcaatgccacctaaacgcgctgga
tatttcgaccataccgaaccagtccaaaatagagtatacaaatcattgaaactctggtcc
atgtacgctgatttagaagagagtttcgggaccttccatacttgtaaagctgtttatgat
cgtatcttggatctccgaatctccactccgcaaattattatcaattacggaatgtttttg
gaggacaaccgttattttgaagaggcttttaggctttatgaacgaggtgtcgggatgttt
aaatgggccaaacgttttcgatcttggaatacatatttgactaaattcattgcaaggtat
ggtggaaagaaactagagcgcgctagagatctttttgagcaagctttagacggatgtccc
cccaagttcgcaaaaaatttgtatctcttatacgccaagcttgaagaagaacatgggtta
tcaagacacgcaatggcagtctacgaaaaagctacgaaggccgttttaccagaagaaaaa
tacgatatgtttaatatttatattaaacgtgtggcggaaatatacggagttacacataca
aggccgatataccaacgtgcgattgaatcactcgaagatgctcaagcgagagatgtttgt
ctccgatttgctgatctcgaacagaaacttggtgaaattgacagagcaagagcgatttat
gctttctgctctcagatgtgtgatccaagaaccacagctgaattctggcagacgtggaaa
actttcgaagtaaaacacggaaatgaagacacagttcgtgagatgttacgaatcaaacga
agcgttcaagcaacctataatactcaagtcaacttcatgtcggctcaaatgctggctgct
gcttccaacactacaggtacttcggccgatcttgcacctggtgatccgggaaccgatgaa
atgaaacttctcgaagccaaagctcaggctgccagcgctcagaaggaaaaagttcagccc
aagaaaggaattctatttgttagaagcgataacacacagaatcctgcttcagaacaggtt
gtcactgagaatccagatgagatagatctagatgccagtgatgatgaggaagcgttgcca
gatatttccattaaaaaacgagccgttcctgatcaagtatttggtggaatcaaaagagct
tctgatgatgaagaatga
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