Styela clava (leathery sea squirt): 120328687
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Entry
120328687 CDS
T07291
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120328687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120328687
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120328687
Spliceosome [BR:
sclv03041
]
Complex A
U2 snRNP components
U2 related factors
120328687
Complex B
120328687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
120328687
NCBI-ProteinID:
XP_039251151
LinkDB
All DBs
Position
Unknown
AA seq
1152 aa
AA seq
DB search
MSDNSESVLDNVTDELKIKIKEEKSSIEKTAKKERKDGRKRSRSRSNSRDRSSRKGGKYR
RESPSHRRRHGRSYRSRRSKSRSRSRSKGKKSSSRRSRERQDKKSDSSRRRKQSSSSSSS
SSDGESNAEKADKSEKKPPEAKAGTSTVTKSTNKERRSKERGEKSRDRRSRRSRSRDKRR
RSSRERRRSRSRNRDSRSKKPSRHSRQSSKEKETTKSSSDKKEAEKTKELNTGDFEQAKL
EEEMKKRRDRVEMWRKEQKSALLKAGDGDSESANGDDSGPRKTWTLEDDDDDDLNEETAD
NDLNEETADREEKDEKMEEETNEISNEKDMSIEEAEDEVDPLDAFMMNLESQSDSVYKKN
ASMTENTDGPKISRVVAVAKSKNEIEIRPEKRKGELMEADVDAMEYSSEEEEESLSSAFN
KFQSKQRNRKLDTVIDHTKIKYEPFRKSFYVEVPELAALTEEEVAERRMELENVKVRGKN
CPKPIKSWAQVGVSFKVLNALKKAKFEKPTAIQSQALPAIMSGHDLIGIAKTGSGKTLAF
LLPMFRHIMDQRPLLDGEGPIAVIMTPTRELALQITKECKKFTKPLHLNAVCVYGGTGIS
EQIAELKRGAEIIICTPGRMIDMLAANSGRVTNMRRCTYMVLDEADRMFDMGFEPQVMFI
INSARPERQTVMFSATFPRQMEALARRILAKPIEVQVGGRSVVCSDVAQTVVILNREQKF
LKLLELLGSYQEQGSVLVFVDKQEHADSLLKDLMDSSYPCMALHGGIDQYDRDSVISDFK
NGVSRLLIATSVAARGLDVKNLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAFTFIIKE
QARHAGDIIKALELSGAPVPPQLETLWLNYKTDLKSQGKEVSKNSGFTGKGFKFDETEDE
LVRERKQFQKTALGLHDSDDESPVKDIDEQIENMFNSKKRVKDVVGPVLLHGAGGESAQP
GGPLSGSNIEKLEIARRLASRINLKKNLGAEAQDVTQQAATAIMKGGRFQAPKVSAKTIA
EQLAEKLNQKLNYVPQEKPEDEEADSGSTVKRYEEELEINDFPQTCRWKVTSKDTLGQIS
EYSEAGITIRGQYLPSGKTPEEDERKLYLAIEATSEMAVQKAKSEITRLIKEELIRLQNS
YQPINKGRYKIT
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtcggataattccgaatctgttttggacaatgtaacagatgaactgaagattaaaatt
aaggaagagaaaagcagcatcgaaaaaacagcaaaaaaagaacgcaaagatggtcgtaag
cgatctagatcacgatctaattctcgggatagaagttcacgaaaaggaggaaaatatcgc
agggaaagtccgagtcatagaagacgacatggacgctcatatcgatcccgtcgatcaaaa
tcgagatccaggtcaaggagcaaaggaaaaaagtcatcttcaagaaggtcaagggaaaga
caggataaaaagtccgactctagtcgtaggcggaagcaaagttcgagttccagtagtagc
agtagtgatggtgaatcgaatgctgaaaaagctgataaatctgagaaaaagccacccgag
gccaaagcaggaacttcaacggtaacaaagtcgactaataaagaaaggagatcgaaagag
agaggtgagaaatcgagggatcgtcgatctcgaagatcaaggtcacgagacaaaagaaga
cgatcatctcgagaaagacgtagatcacgttcacgtaatagagattcaaggtcaaagaaa
ccttcacgacattccaggcaaagttctaaagagaaagagactactaaatcttcatcagac
aaaaaagaggcggaaaaaacaaaagaactcaacactggtgactttgagcaagcaaaattg
gaagaggaaatgaagaagcgccgagatagagtagaaatgtggcgcaaagaacaaaaatct
gcacttttgaaagcaggtgatggcgatagtgaaagtgctaatggcgatgatagtggacct
aggaagacctggactttagaagatgatgatgacgatgatttaaatgaagaaactgcagat
aatgatttaaatgaagaaactgcagatagagaagaaaaggatgaaaagatggaagaagaa
accaatgaaatatcgaatgaaaaggacatgtctatagaggaggcagaggatgaagttgac
cctcttgatgcattcatgatgaatcttgaatcgcagagtgatagtgtgtacaagaagaat
gcctccatgacggagaatacagatggccctaagattagcagagtggttgccgtagcaaaa
agcaaaaatgaaattgaaatcagacctgaaaaacggaaaggagaattgatggaggctgat
gttgatgccatggaatattcttctgaggaggaagaggagtcactatccagtgcatttaat
aaatttcaaagcaaacagcggaatcgaaaactggataccgtaattgatcatactaaaata
aaatatgaaccttttcggaaaagtttctatgttgaagttcctgaacttgctgcattgaca
gaagaagaagttgctgaaagaagaatggaacttgaaaatgttaaagtcagaggaaagaat
tgtccaaaacccattaaaagttgggctcaagttggagtttcatttaaagttctgaatgct
cttaaaaaggccaagtttgagaaaccaacggccattcaatcccaagcattgccagctatt
atgagtggacatgacttaattgggattgcaaaaactggtagtggcaaaacattggccttt
cttttaccgatgttccgtcatatcatggatcaacgtcctttgctagatggagaaggacca
attgctgttatcatgactcctacaagagaactcgctttgcaaattactaaagaatgcaaa
aagttcaccaaaccccttcatctcaatgctgtatgtgtgtatggaggtactggtatctct
gaacagatagcagagctcaagcgaggtgctgaaatcataatatgcactcctggtcgaatg
attgatatgcttgctgccaacagtggacgagtaaccaacatgagaagatgtacttatatg
gttcttgatgaagctgatagaatgtttgacatgggttttgaacctcaagttatgtttatt
attaattctgcaagaccagagagacaaactgtcatgttttcagcaacttttcctcgacag
atggaagctctcgctcgcagaatattggcaaaaccgattgaggtacaagtaggaggaagg
agtgttgtatgttcagatgttgcacaaactgttgttattctaaacagagaacaaaaattt
ttaaagctcctggaattattaggttcctaccaagaacagggatcggttttggtatttgtt
gataagcaagaacatgctgattcattattaaaagatcttatggatagctcatacccttgt
atggcattacatggtggtattgatcaatatgacagggactctgttatcagtgacttcaaa
aatggtgtttcaagattattgattgcaacctccgtagcagcaagaggtcttgatgtaaaa
aatctcatcttggttgttaactatgactgcccgaatcattatgaagattatgttcataga
tgtggcaggacaggtcgtgctggaaacaaagggttcgctttcactttcataataaaagaa
caggcacgtcatgctggtgatattatcaaagcacttgagcttagtggtgctccagtacct
cctcaattagaaactttgtggttaaattataagacagatcttaaatcacaaggtaaagaa
gtttcaaaaaatagtggttttaccggaaaaggttttaaatttgatgaaactgaagatgag
cttgtcagagaacggaaacagttccagaaaaccgctcttggattgcatgattctgatgat
gaatctccagtgaaagatattgacgaacaaatcgaaaacatgttcaatagtaaaaagaga
gtcaaggatgttgttggtcctgttctacttcatggggcaggaggagaatccgctcaacct
ggaggacctctttctggatctaacatagagaagttggaaattgcgagacgactcgcatca
agaatcaatctaaagaaaaacttaggtgctgaggcacaagatgttacacaacaggctgct
acagcaattatgaaaggtggtcgatttcaagctcccaaagtgagtgcgaagacaattgca
gaacaactagctgaaaaattgaatcagaaactaaattatgtgccacaagagaaaccggaa
gatgaagaagctgattctggatcaactgtcaagcgttatgaagaggagctggagataaat
gatttcccacagacttgtaggtggaaagtaacttctaaagatacattggggcagattagt
gagtacagcgaagctggaataacaattcgtggacaatatcttccaagtggtaaaactccg
gaagaagatgaaagaaaattatatttggccattgaagccacttctgaaatggcagttcaa
aaagctaaaagtgaaatcactcgtcttattaaggaagagttgataagactacaaaactct
tatcaacctattaacaaaggacgatataaaattacataa
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