Styela clava (leathery sea squirt): 120328904
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Entry
120328904 CDS
T07291
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120328904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sclv03000
]
120328904
Transcription factors [BR:
sclv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
120328904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_3
Ank_5
Ank_4
Death
Ank_KRIT1
GH114_assoc
Ysc84
Motif
Other DBs
NCBI-GeneID:
120328904
NCBI-ProteinID:
XP_039251404
LinkDB
All DBs
Position
Unknown
AA seq
1199 aa
AA seq
DB search
MYHSPQRTLPFQQKYENTINMYPDESQEPFLDIIEHPKARGFRFRYSCEGPSHGGIPGAS
SDKNKKTYPAVQIRNHSGYARIVVQLVTNEENPRLHPHSLVGKQCQNGICTVQCGPKDMT
ATFPNLGIQHVTKKNVAKILEERYLAAEMQLSSLNEGLTADIQNAIKDEDKQRIRSKASA
EAKSIDLSVVRLMFIAYLPDSNGAFTLMLKPVISDAIFDSKSPNAATLKICRMDKTHGAA
SGMDEIYLLCDKVQKDDIQVRFFEEDEYGNDDGWDAYGDFSPTDVHRQFAIVFRTPRYKD
VSIDKPVQVQVQLRRRSDGEVSEPRTFTYMPVQDDPEQILRKRKKVSAHFEDHVVGNQPN
GNAGHAPMGTYRQSGGFVFQSSGNNTGGGGKQTKRFGPPPRQANPQKGPLDPSLLLYKMH
HMKQEPASPPMMNGGMMMNNGVSSQEVLHGSHAMVPSPQGSDRSAVFVRSSQGINANMRA
VSIGSSSPHSSSHGSPMSADLNGVVAPQISESNFIPGTRVPFPQMLANSTQAQPQISQQQ
WVQMQTVPVQYQQVQLVQQQTLPSMQLQGQFIYAQVPPTTSSGNALYFDPGTGDVQAGES
YALEEVIGQEVVGTNVDEDINDFIATTLSGFTGSAQTFTSSASGQMEGPIMDILMNSETQ
IVTDAVSEETKTDAMTKNVDDEGFSAGMQDTSVIPEIKTEKAVQDVIEADSCAIERQLET
ANAPVEVGKNKPKVQVKESQPQTMTQSAETKQKRPPPNITDDMKLKQEAEIIDRLDKTSL
QKLLVNITIRTAKAMQDFAATGDIRIILATQRRLTDIQDSDGDTPLHLAVINGQDKVLLA
LIQLIQTIPSSGEIINRMNDTQLTPLHIAVHSENANAVKWLMGAGADAMLGDSRGNTAIH
LACSTGQADLLEYMLMKSCDGIEPHNYNGLTPLHTLASKVSESARQCISLLIKHGHNVDS
GDMKSGRTALHIAAEENNLIVAGYLISECNADLECRTFSGLTPLHIAVARDSQEIATLLL
ACGADPQSEYSEDPNSIPLSLCVSSRMRDILEGGSAYDHCDIGSEYSSLVDSSEDLYSLE
PIIKMKLSRLLDPISDGKDWYALAKRLGLGALIGIFEDEEKSPTETLLENYSCIQGTVTG
LRAALTQIDRQDAIDVLNKSQTNESAKLCHKDEVDLERVDSAFESMTLSESQNISIPQC
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgtatcactctcctcaacgaacactaccttttcaacaaaagtacgaaaatacaataaat
atgtatccggatgagagtcaggaaccgtttcttgacattatcgaacacccaaaagcgaga
gggttcagattccggtattcttgtgagggaccatcccacggtggcatacccggggctagt
agtgataaaaacaagaaaacatatcctgcagttcagataagaaatcactcaggatatgca
agaattgttgttcaacttgttacaaatgaagagaacccacgacttcatcctcactctttg
gttggaaaacaatgtcagaatggcatctgtacagttcagtgtggacccaaagacatgact
gccacatttcccaatcttgggatacaacatgtcacgaaaaaaaatgtagcaaaaattctt
gaagaacgatacttggctgccgaaatgcagctctcgtccctcaatgaaggattgaccgcg
gacattcaaaatgctataaaggatgaagacaaacaacgcatcaggtctaaagcatctgca
gaggcgaagtccattgacctctcagtcgtgagactcatgttcattgcctacctgcctgat
agcaatggagcttttactttgatgttgaaaccagtcatttctgatgccatttttgacagc
aagtcacccaatgcagcgacattgaaaatttgtcgtatggataaaactcatggtgcggca
agtggaatggatgagatttacttgttatgtgacaaggttcagaaagatgatattcaagtt
cgcttctttgaagaagatgaatatggaaatgatgatggctgggatgcttatggtgatttc
tcccctactgatgtacacaggcagtttgcgatcgtatttcgaacaccaagatacaaagat
gtcagcatagacaagcctgttcaagtgcaggttcaacttagacgtagatcagacggtgaa
gtatcagaaccacgtactttcacctacatgcctgttcaagatgatcctgaacagatactg
aggaagcgtaaaaaagtcagcgcacattttgaagatcatgttgtaggcaatcaacccaat
ggtaacgctggacatgcacctatgggtacctatcgccagtcaggtggtttcgtctttcag
agcagtggaaacaacactggtggtggtggaaagcaaactaaacgttttggacctcctcct
agacaagccaatccacaaaaaggacctcttgacccatcattgttgctgtataaaatgcac
cacatgaaacaggagccagccagcccgccaatgatgaacggtggaatgatgatgaataat
ggggtctcaagtcaagaggtattgcatggctcacacgctatggtgccttcaccacaagga
tctgatagatctgctgtctttgtcaggagttcacaaggaataaatgcaaacatgcgggca
gtcagcattggcagttcaagtccccacagttcgagccatggatctcctatgtcagctgat
ttgaatggagttgtcgcaccacaaatttcagagtcaaatttcatccctggaacacgtgtc
ccttttccacagatgttggccaatagtacccaagcacaaccccagatttcacaacaacag
tgggttcagatgcaaaccgttccagtacaatatcaacaagtacaactagttcaacaacag
acacttccatcaatgcagttacaaggacaattcatttatgctcaggtgccacccaccacc
tccagcggaaatgcactttatttcgaccccggtacaggagatgtacaggcaggagagtca
tatgcattagaggaggttatcgggcaggaagttgtaggcacaaatgtggatgaagatatc
aatgatttcattgctaccaccctcagtggttttacaggatcagcacagacttttaccagc
tcagcatctggtcaaatggaaggaccaatcatggatatactcatgaattcagaaacgcag
atcgttacagatgcagtctccgaagaaaccaagaccgatgccatgaccaaaaatgttgac
gatgaaggtttctctgcagggatgcaagatacctcggtaatacccgagatcaagactgaa
aaagcagtccaggatgttattgaagccgatagctgtgctattgaaagacagcttgaaaca
gccaatgctccagttgaagttggaaaaaataagccaaaagtacaggtaaaggaaagtcaa
ccacaaacaatgactcaatcagcagaaacgaaacaaaaaagaccaccacccaacattaca
gatgacatgaaattaaaacaagaggctgaaattatcgatcgactcgataaaacatcacta
caaaagctcctggtcaacattaccatcagaactgccaaagcaatgcaggactttgcagca
acaggagacatccgtataatactcgcaacacaacgtcgtctcactgatattcaggacagc
gatggggacaccccccttcacctggccgtcatcaacggacaagacaaggttcttcttgca
ttgatacaactgattcaaaccataccaagtagtggcgaaatcatcaatagaatgaatgat
actcaactcacaccactacatattgctgtacacagcgaaaatgctaatgctgtaaagtgg
ctgatgggtgctggtgcagatgccatgcttggtgattcgagagggaacacagcaatccat
cttgcctgtagtacaggacaagctgacctactggaatatatgctgatgaagtcttgtgat
ggcattgaaccacacaactataatggccttactcctcttcatacacttgcaagcaaagta
tctgaaagtgctcggcagtgcatcagtttgctgataaagcacggacacaatgtggattct
ggagatatgaagagcggacgtactgcattacatattgcagctgaagaaaacaacctgatt
gttgctggttatcttatctctgagtgcaacgcagaccttgaatgtcgtaccttcagtgga
ttgacaccacttcacattgccgttgcaagagattctcaagaaatcgcaactttattgctc
gcatgtggggctgacccacagagtgaatattcagaagaccccaatagtattccactttcg
ctttgcgtcagttcaagaatgagagatattctggagggaggttctgcttacgatcattgt
gacattggatcagaatattcatcactagtagatagcagcgaagatctgtactcacttgaa
cccatcatcaaaatgaagttatctcgactactcgatccaatcagtgatggcaaggattgg
tatgcccttgccaagagactcggacttggagcactcattggcatatttgaggatgaggaa
aaaagtccgactgaaactcttcttgagaactattcttgtatccaaggtacagtgacagga
ctcagagccgctttgacacaaattgacagacaggatgccattgatgttctcaacaaatct
cagacaaatgaatctgcaaaactgtgccacaaagatgaagtagatttggaacgtgtcgac
agtgctttcgaatcaatgacattgtctgaaagtcagaatatttcaataccacaatgttaa
DBGET
integrated database retrieval system
