Styela clava (leathery sea squirt): 120328956
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Entry
120328956 CDS
T07291
Name
(RefSeq) RNA helicase aquarius-like
KO
K12874
intron-binding protein aquarius
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120328956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120328956
Spliceosome [BR:
sclv03041
]
Complex B
Other components
Prp19-related factors
120328956
Complex C
120328956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
ResIII
AAA_30
DEAD
UvrD-helicase
SLFN-g3_helicase
AAA_22
AAA
AAA_16
UvrD_C_2
PhoH
Parvo_NS1
NB-ARC
nSTAND3
DnaB_C
S-Me-THD_N
Motif
Other DBs
NCBI-GeneID:
120328956
NCBI-ProteinID:
XP_039251484
LinkDB
All DBs
Position
Unknown
AA seq
1446 aa
AA seq
DB search
MPKQSARLAPTTEQMLFDPLTKLASKHWSNEALEKSEKFQSSIIEKVFSTEIVGKEFIPR
RLMMLEFSRYLENYLWPNFTPETSTHAFVMSIVCMVNEKRRESVPAWEVFIEKPEHFGHF
FTEVMKIVLNSEHPIIQRTVCIVFLNHCYNSIEVDVVRLRTLRTLTLGCWKCLLPERLES
ELKKSTKLKKLWKSIAKKDAKASDDENEKSEFDRSFLRKLMDHFLTLLFSTNMNDEAIDH
CQRFLQLMIDLDSCLVTRRNFNTLLDDAQFVVRCRQSQLYKNDDVFSQLVENLAAYAVFE
VNDLTGEALTEQEMLTAHYDRMQKLQRCAFSKFPNLKEFALGTVVHNDKREALNKHFGAL
SLEEMKKLCDQIVMRVSEEDDKRIILEMLINKYERRPSQLEAINRLPLYPTEKVLWDENL
TKTENFFHDRTLALPKLNLQFLTLHDYLLRNFNLFRLESAYEIKSDIEDAVKRLQPYPTN
DGSSSFGGWSRMALPIQAFNVVEVAKPDIAESCPSQVRADVTIALSSSRQLRAEWENLRK
HDVCVLLSVTALEVDETVRRDRSVPFLSKYHVVVRGCEIEGMLDSEGHVIEEGPEPKPQL
DGNTRTYRIWLDTNQYQDDMEAVLKDGEQDPYETFNVIMRRKPKENNFKAVLATIRNLMN
VQCVVPTWLHDVLLGYGDPGAANYKKLGRIIDNLDWNDTFLSLDHLKEAFPGYDVSLSED
SQIPIPPFKLSFPEDKKISVTAHVIPNRGPYPFNAPQKNTIRFTPTQTEAIRSGMQPGLT
MVVGPPGTGKTDVAVQIISNLYHNFPEQRTLIVTHSNQALNQLFEKLIHLDIDERHLLRL
GHGEEELDTEKDFSRYGRVNYVLTQRLALLKDVGRLQESLGVPGDVSYTCETASHFFKYQ
VLSRWEQYQHEVKNKNTSETVSDKFPFHSFFAAAPQPLFPKKDFEHDWDIAQGCFRHIKN
IFEKLQEYRAFELLRSGLDRSHYLLVKSAKIIAMTCTHAALKRQDLTKMDFKYDNILMEE
SAQILEIETFIPLLLQNPSDGYNRLKRWIMIGDHHQLPPVIKNMAFQRLCNMEQSLFARL
VRLGVPTVDLDAQGRARPSIRSLYSWRYKVLRDLPHVLAQPEFKMFNPGFVFDFQVINVE
DYNGVGESEPNPYFYQNLAEAEYCVGVFMYMRLLGYPSSEITILTTYNGQKHLIRDVVRQ
RCGDNPLIGWPDKITTVDRFQGQQNNYILLSLVRTKTVGHIRDVRRLIVAMSRARLGLYI
FARVPLFRNCFELSPAFKQLLMRPMQLELLTGETYPPKTLRNTAAPKFVIKDMAQMHQYV
YDMYLTIVKEMNKQKVAFQSLAEPPEPTTEDDKENKFEEVPIAFEVEPPVSETKDMEQDE
ANSAQQAGDEKQQAVESTDNKAKDGDQEPAQSEEKDVESDANQSNDDKDPAPKKMKLDEP
DEQEKI
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcaaagtgccagattggctccaactacggagcaaatgctttttgatccttta
acaaaattggcatcaaagcattggtcaaatgaagcattagaaaaaagtgagaagtttcaa
tcaagtataatcgaaaaagtattttcgactgaaattgttggcaaggaatttattcctcga
aggctcatgatgctggagttcagtcggtatttagaaaattatttatggccaaattttaca
cctgaaacatcgacacatgcatttgtaatgtcaattgtatgcatggtcaatgaaaaaaga
cgggaaagtgttcctgcatgggaagtattcattgaaaagccagaacattttgggcatttc
ttcacggaagttatgaaaatagttttgaattcagaacatccaattatccaacgtaccgtg
tgcattgtttttttgaatcactgctataacagtattgaagttgatgttgtaagattacga
acccttcgtactcttacacttggatgttggaaatgcttactaccagaaagattggaaagt
gaactgaagaaaagtactaagctcaaaaaactttggaaatctattgctaaaaaagatgct
aaagcttcggatgacgaaaatgaaaaatctgagttcgatagaagctttctccgaaaactg
atggatcattttctcactcttcttttttctacaaatatgaatgatgaagctattgatcat
tgtcaaagatttttgcagttgatgattgatctagattcttgcctcgtaactcgaagaaat
ttcaatactttactagatgatgctcaatttgtagttcgttgtcgccaatctcaactctac
aaaaacgatgatgttttctcacagcttgttgaaaatcttgcagcttatgcagtttttgaa
gtcaatgatcttacaggggaggcactcacagaacaggaaatgcttacagcacattatgac
cgaatgcagaagttgcagaggtgtgcattttcaaagtttccaaacttaaaggaatttgct
cttggaactgtagtacacaatgacaagcgtgaagcgctcaacaaacattttggagcttta
agtttagaagaaatgaaaaaattatgtgatcaaattgtaatgagagtcagtgaagaagat
gacaaacgaattatacttgaaatgctaataaataagtatgaacgacgaccatcacaactt
gaagcaatcaacagacttccgctttatcctactgaaaaagttctttgggatgagaatctt
acaaaaacagaaaacttctttcatgataggacattggcacttccaaaactaaatcttcag
tttttgactcttcatgactacctattgcgtaacttcaacctttttcgtcttgaatcagcg
tacgaaattaaaagcgatattgaagatgcggtgaaacgtcttcaaccttatcctacaaat
gacggatcttcatcttttggtggatggtcaaggatggcactacctatccaggcattcaac
gttgtggaagttgccaaaccagatatagcagagtcttgcccttctcaagttcgtgctgat
gtcacaattgctttgtcatcatcaaggcaactgagagcggaatgggaaaatctacgaaag
catgatgtttgtgtgcttctgtctgttacagcacttgaagtggatgaaacagtgagacga
gaccgtagtgtaccatttctatcaaaataccatgtagttgtacgaggttgtgagattgaa
ggaatgcttgatagcgaaggtcatgtgatagaagaaggtccagagccaaagcctcaactt
gatggaaatactcgtacctatagaatctggttagacaccaatcaataccaagatgatatg
gaagcagttctgaaagatggtgaacaagatccgtatgagacattcaatgtcattatgcgg
cgcaaaccaaaagaaaacaactttaaagcagtgcttgctacaataagaaatctaatgaat
gtacaatgtgttgtaccaacctggctacatgatgtactgctaggatatggagatccaggt
gcagcgaactacaaaaagttaggacgcatcattgataatcttgactggaatgacactttc
ttgtctttggatcatcttaaagaagcatttcctggttatgatgtgtcactttctgaggat
tcccaaattccgattccaccattcaaattgtcttttcctgaagacaagaaaatttcagtc
actgcacacgtgataccaaatcgtggaccttatccatttaatgcaccccagaagaataca
atcagatttactccaacacaaactgaagcaatcaggtcaggaatgcagccgggtcttacc
atggttgttggacctcctggtactggaaaaactgatgttgctgtgcaaatcatctctaat
ttgtatcataactttccagaacagaggacactgattgttactcattctaaccaggcattg
aaccagctttttgagaaacttattcatttagatattgacgaaagacaccttctacgttta
ggtcatggtgaagaggaactcgatactgaaaaagatttttcaagatacgggagagttaac
tatgttttgactcaaagattggcacttctgaaagatgttggtagattgcaagagagctta
ggtgttcctggtgacgtctcatacacttgtgaaactgcgtcacattttttcaagtatcaa
gtgctttcaagatgggagcaataccagcatgaagttaaaaataaaaacacttctgaaaca
gtgtctgacaaatttccctttcactcattcttcgcagctgcaccacaacccctttttccc
aaaaaggattttgagcacgattgggacattgcgcaaggatgtttcaggcatattaaaaat
atctttgaaaaacttcaagaataccgtgcgtttgaacttttacgttctggccttgatcgt
tctcattacctgcttgtcaaaagtgcaaagattatcgctatgacatgtactcatgcagca
ctaaagaggcaagatttaactaaaatggatttcaagtatgataacatactcatggaagag
tccgctcagatcttggaaattgaaacgtttatacctctgttactgcaaaatccttctgat
ggatacaacaggttaaaacgttggataatgattggagatcaccatcagttaccacctgtg
ataaaaaacatggcatttcaacgtttatgtaacatggagcagtccctatttgcaaggctt
gttcggttgggagttcccactgtagatctcgatgctcaaggcagagcaaggccgtctatt
cgcagtctctatagttggaggtacaaggtattgagagatttgccacatgttctcgcacaa
cctgaatttaagatgttcaatcctggtttcgtgtttgattttcaagttataaatgttgaa
gattataatggagtgggagaatcagaacccaatccttatttctatcaaaatttagctgag
gctgaatactgtgtaggtgtcttcatgtacatgcgacttcttggatatccaagctctgaa
attacaatcttgacaacgtacaatggtcaaaagcatttaatcagagatgtcgtcaggcaa
agatgtggtgacaaccctctcatcggatggccagataaaatcaccactgttgatagattc
caaggtcaacaaaacaactacattcttctttctcttgttaggacaaagacagttggacac
ataagggatgtaaggagattgattgttgctatgtcgagagctaggctgggtttgtacatc
tttgcgagagttccactcttcagaaattgctttgagttatcacctgctttcaagcaatta
ttgatgagacctatgcaactagaattactaacaggagaaacctaccctccaaaaacactg
cgcaatacagctgcacctaagtttgttatcaaggatatggcacagatgcatcaatatgtt
tatgatatgtatttgacaattgtgaaagaaatgaataaacaaaaagttgcattccaatca
ctggctgaaccacctgagcctaccacagaggatgataaagaaaataaatttgaagaagta
ccgattgcctttgaagtagagcctcctgtgtcagaaacaaaagatatggagcaggatgaa
gcgaattcagcacaacaggctggagatgaaaaacagcaagctgtggaaagcacagataac
aaagcaaaggatggtgatcaagaaccagctcaaagtgaggaaaaagatgtagaatctgat
gcaaatcaaagcaatgatgacaaagatcctgctccaaagaaaatgaaattagatgagcca
gacgaacaagaaaaaatttag
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integrated database retrieval system
