Styela clava (leathery sea squirt): 120329296
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Entry
120329296 CDS
T07291
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120329296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120329296
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120329296
Spliceosome [BR:
sclv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120329296
Complex C
U4/U6.U5 tri-SnRNP related factors
120329296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
nSTAND3
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
120329296
NCBI-ProteinID:
XP_039251809
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MALQVWVEDKLHEILGMSEKHVAQYLIGLCQKSTSMDGFADTLQKTGAFDVTDKFLSFAK
DLYAKVPHKQVATSNTNRLREQKIVSMHQKNLSYKLVSSDDDETIPPKSSRKTTSVSFSD
KKERKGSMGKKVRAIRKRNQSSSESEDEQPTGNDKDDKSGSSSSDEWDKEEQQRKQDLEE
RDKFAERMKKKDKEKTRKVMDRSDGKAYKEAKKRLEIADANDSKILQDLRKKSRREYLKK
REEDKLQELEGDIYDEEHFFAGEELTEKERQELEFKKQVRDIALNYKGIGESQKRGRYYI
PEEKKRGDIHDEYDETIGPSGESGKLISENERWEEARIHAAIAHYGAKDAREKKEEKKYE
LLTEDDVIEFVQAATHKGTLNEDQSPDMSASEKKKMSIKETRENLPIYGFREDLLDAIDE
HQVLIIEGETGSGKTTQIPQYLCESGYCKGGVKVGCTQPRRVAAMSVAARVASEMNVKLG
AEVGYSIRFEDCTSERTKLKYMTDGMLLREFLTEPDLKGYSVIMIDEAHERTLHTDILFG
LVKDIARFRPELKLLISSATLDAEKFSAFFDDAPIFRIPGRRYPVDIYYTKSPEADYLDA
CVVSVFQIHLTQPLGDILIFLTGQEEIETCAEVIQERARQLGSRIKELVILPIYANLPSD
MQAKIFEPTPPGARKVVIATNIAETSLTIDGIVYVIDPGFCKQKSFNARTGMESLIVVPC
SKQNANQRAGRAGRVGPGKCFRLYTAWAYKHELEDASVPEIQRTNLGNVVLMLKSLGIND
LIHFDFMDPPPHETLVMALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKTLLASEKY
KCSEEVVTIVAMLSVNNSIFYRPKDKIVHADNARQNFYMPGGDHLVLLNVYNQWVGTGHS
TQWCFENFIQHRSMKRARDVRDQLEGLMERVEIEPTSNPNDIVGIRKAFTAGFFYHVARL
TKGGYKTAKHQQSVHIHPNSSMFEEQPRWLLYFELVFTSKEFMRQVIEIDSQWLLEVAPH
YYQAKEIEDSSKKKMPKNVGKSREELG
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggctcttcaagtttgggtcgaagataaacttcatgaaatccttggtatgagtgagaaa
catgttgcccaataccttattggactatgtcagaaaagtacatcaatggacgggtttgct
gacactctacaaaagactggtgcgtttgatgtcactgataaatttttaagttttgcaaaa
gatttatatgcaaaagttccacacaaacaagttgccaccagcaatactaatcgtttacga
gaacaaaaaattgtttcaatgcatcagaaaaatttaagttataaattagtgtcatctgat
gatgatgaaactattccgccaaaatcaagtcgtaagacaacatcagtttccttctcggat
aagaaagaaagaaaaggatctatgggtaaaaaagttcgagcaatacgtaagcgtaatcag
tcatcttctgaaagcgaggatgaacaaccaacaggaaatgacaaagatgataaatctgga
tcgtcatcatcagatgaatgggacaaggaagaacaacaaagaaaacaagacttggaagag
cgagataaatttgctgaacgaatgaaaaaaaaggataaagagaaaaccagaaaagtcatg
gatcgaagtgatggaaaagcatacaaagaagcaaaaaaacgtcttgaaattgcagatgcc
aatgactcaaaaatcctacaagatcttcgtaaaaaatcaaggcgagaatatttgaagaaa
agagaagaagataaattacaagaattagaaggtgatatttatgatgaggaacattttttc
gctggtgaagaattaacagaaaaggaacgccaagaattagaattcaagaagcaagttcgc
gatatcgcgttaaactacaaaggtattggtgaatcacaaaaacgaggtcgttattacata
ccagaggaaaaaaagagaggtgatatacatgatgaatatgatgaaactattggaccatca
ggagaatctggtaaattgatttcagagaatgaacgttgggaagaagctcgtattcatgcc
gcaatagctcattatggcgctaaagatgcaagagaaaagaaagaagagaagaagtacgag
cttctcacagaagatgatgtgattgaatttgttcaagctgctacacacaaaggcacattg
aatgaagatcaatcaccagatatgagtgcatctgaaaaaaagaaaatgtctataaaagaa
actagggaaaatcttccaatctatggatttcgtgaagacttattggatgctattgatgaa
caccaagttttgattattgagggtgaaactggtagtggcaaaactactcagattcctcaa
tatttgtgtgagagtggatattgcaaagggggagtgaaagtcggttgtactcaacctcgt
cgagttgctgcaatgtctgtagcagctagagttgcatcggaaatgaatgtaaaacttggg
gcagaagttggttactcaattcgatttgaagattgtaccagtgagcgtaccaagttaaaa
tatatgactgatggtatgctcttgcgtgaatttctcactgaaccagacttgaagggatat
agtgttattatgattgatgaagctcatgaacgtactttacatacggatatattatttggg
cttgtaaaggatattgctaggtttcgacctgaattaaaattgctaattagcagtgctaca
ttggatgccgaaaaattttctgcattttttgatgacgcaccaatcttcagaataccaggt
cgacgttacccagtggatatttattacacaaaatcaccagaagctgattatcttgatgcc
tgtgtggtatctgtgtttcaaattcatctgacacagcctcttggtgatattcttattttt
ttaactggacaagaggaaattgagacttgtgctgaagttattcaagagcgtgcgaggcaa
ctagggtcaaggatcaaagaacttgttattttacctatttatgcaaacttaccatctgat
atgcaagcaaaaatatttgagccaactcccccaggtgctaggaaagttgttattgccact
aatatcgcagagacttctcttactattgatggaattgtttatgtaattgatcctggattt
tgtaagcaaaaaagttttaatgcaagaacaggtatggagtctcttatagtagttccatgt
tcaaaacaaaatgcaaatcaaagagcgggccgagctggaagagttggaccaggaaaatgc
ttcagattatatactgcatgggcttacaaacatgaacttgaagatgcaagtgtccctgag
attcagcgaacgaacctcggaaatgttgtattgatgcttaaaagcttgggtatcaatgat
ttaattcattttgattttatggatccaccccctcatgaaactcttgttatggctttagag
cagctttatgcacttggtgctttgaatcacctcggtgaactaacaaaactggggcgtaga
atggcagaatttccagttgatcctatgttatcaaaaactttgttagcatctgagaaatat
aaatgttctgaagaagtggtaaccatagttgccatgttatcagttaataactccatattt
tatagacccaaagataagatagtgcatgctgataacgctcgacaaaacttttatatgcct
gggggtgaccaccttgttttactaaatgtatataaccaatgggtgggaactggtcattct
actcaatggtgctttgaaaatttcattcaacataggtcaatgaaaagagctcgtgatgta
cgagatcaactcgaaggtctgatggaacgtgtggaaattgaaccaacttcaaatccaaat
gatattgttggaatacgtaaagcgtttacagcaggatttttctatcatgttgctcgcctg
acgaaaggtggttacaaaacagctaaacatcagcaaagtgttcacattcatccaaatagt
agtatgttcgaagagcaacccagatggcttttatattttgagcttgtgtttacaagtaaa
gaattcatgcgacaagtcattgagatagacagtcaatggttacttgaagttgccccacat
tactatcaagcgaaggaaattgaagattctagtaaaaagaaaatgccgaaaaatgttggt
aaatccagagaagagctaggatga
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