Styela clava (leathery sea squirt): 120329318
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Entry
120329318 CDS
T07291
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120329318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120329318
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120329318
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
120329318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
DUF7319
Motif
Other DBs
NCBI-GeneID:
120329318
NCBI-ProteinID:
XP_039251841
LinkDB
All DBs
Position
Unknown
AA seq
197 aa
AA seq
DB search
MAELLKSSQICVPGERLASAEHHRAGFGTYVKRGYIFASLAGMVRSEQNDKDIITVSVRS
KHHQQLLPQIDSIVTCKVTGISSRFAKCLITAVNNARLSEPLRGIIRREDVRAKDIEKVE
IPKCFRPSDVVLAKVLSLGDASSYLLTTAENGLGVVLARSEAGELMLPISWQEMQCPVSY
VKESRKVARPQEHYLKQ
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcagaactattaaaaagcagtcaaatatgtgtgccgggggaacgtctcgcaagtgct
gaacaccatcgggcaggatttggaacttatgtaaaacgaggatatatatttgcatcatta
gctggtatggttcggagcgaacaaaatgacaaggatataattactgtatctgtgcgatcc
aaacaccatcaacaacttctcccacaaatcgattctatagtcacttgtaaagtcacggga
atcagcagtcgctttgcaaaatgtttaattacagccgttaataacgcaaggttatccgag
ccattgcgaggcatcataagacgtgaggacgtacgtgcaaaggacattgaaaaagttgaa
attccaaaatgttttcgtcccagtgatgtagttttagcaaaagttttgtcactaggggat
gcatcgtcttatttgttaactacagcggaaaatggactcggtgttgttcttgctcgtagt
gaagccggagaactgatgttgcctatcagttggcaagaaatgcaatgtcctgtttcatat
gtaaaagaatctcgtaaagttgcaagaccacaggaacattatttaaaacaataa
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