KEGG   Styela clava (leathery sea squirt): 120329527
Entry
120329527         CDS       T07291                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
sclv  Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:sclv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sclv03041]
    120329527
Spliceosome [BR:sclv03041]
 Complex B
  Other components
   Complex B specific factors
    120329527
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL Beta-prop_RIG_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_Vps41 Ge1_WD40 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F DUF7165 Mala_s_1-like LisH_WDR26 Beta-prop_WDR11_2nd WD40_RFWD3 PROPPIN VPS8_N PQQ_3 Beta-prop_IFT122_2nd Beta-prop_ELP1_2nd LisH_PAC1
Other DBs
NCBI-GeneID: 120329527
NCBI-ProteinID: XP_039252107
LinkDB
Position
Unknown
AA seq 512 aa
MTLEIESADVIRLVEQYLKESNLHRTLATLQEESTISLNTVDSIDGFVSDINNGHWDTVL
QAIQSLKLPDKTLVDLYEQIVLELVELRELGAARSLLRQTDPMLALKHSQPDRYVHLENL
LARSYFDPREAYPDGSTKEKRRAVIAQSLAKEVSVVPPSRLMALLGQALKWQQYQGLLPP
GSTIDLFRGKAATREEEDEKYPTMLNKTIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFATGKIRKDLQFQAQDQFMMMDDAVLCLAFSRDSEMLATGAQDGKIKVWKLTTGQCLR
RFERAHTKGVTCVTFSKDGSQILSASFDQTIRIHGLKSGKSLKEMRGHTSFVNEALFIND
GHNVISASSDGTIKVWSVKTTECSNTFKSFGGGQQDITVNSVHVLPKNLEHFVVCNRSNT
VSIMNMQGQIVRSFNSGKREGGDFVCCTVSPRGDWVYCVGEDQVLYCFSTNSGKLERTLT
VHDRDVIGIAHHPHNNLIATYSEDGLLKLWKP
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgactttagaaattgaatctgctgatgtaatcagactcgtggagcaatatctcaaagaa
agtaacctgcatagaaccctggcaacccttcaagaagaatccactatttcactcaacact
gtagacagcatagatggctttgtgtcggatataaataacggacattgggacacagttctg
caggctattcaatccttaaagctgccagacaagactttagtggatttatacgaacaaatt
gttttggaattggtggaactacgagaacttggtgcggcaagatctcttctcagacagaca
gatcctatgcttgcattgaagcattcacagccagatcgctacgttcaccttgaaaacctc
ctggcaaggtcatattttgatccgagagaagcctatcccgatggatcaaccaaagaaaaa
agaagagccgtgatagctcagtccctggctaaagaggtcagtgttgtaccaccatctcgt
cttatggcattactcggccaggctctgaaatggcaacaatatcaaggacttttacctcca
gggtcaacgattgatttgttccgaggaaaagcagcaacaagagaggaagaggatgaaaag
tatccgacaatgctgaataaaacaatcaagtttggtcagaaatctcatgttgaatgcgca
aggttttctcctgatggacagtacttggtgactgggagtgttgacggttttattgaagta
tggaacttcgcgaccggtaaaattcgtaaagatttacaattccaagctcaggaccaattc
atgatgatggatgatgcggttctgtgtcttgcgttcagtagagacagtgagatgctggca
actggagcccaggatggaaaaattaaggtttggaagttgactacgggccaatgtctacgt
aggtttgagagagctcacactaaaggtgtaacctgtgttacgttctctaaagatggaagc
cagattctcagtgcttcgtttgaccaaacgattcgaatccacggtttgaaatcagggaaa
tctttgaaagaaatgagagggcatacttcctttgtaaatgaggctttgtttatcaatgac
gggcataatgttatcagcgcttcatcagatggaacaataaaagtttggagtgtgaaaacg
accgaatgcagcaacacattcaagtcatttggaggaggccagcaggatatcactgtcaac
agcgtccatgtcttgccgaagaatttagaacattttgtcgtttgcaatcgatctaatact
gtatcaatcatgaatatgcagggccaaattgtccgttctttcaactctggtaaacgagag
gggggagattttgtctgctgcactgtttcaccaagaggagattgggtgtattgtgttggt
gaagatcaggtgctgtactgtttctctacaaattctggtaagctggagagaacattgacc
gtgcatgatagagacgttattggcatcgcacatcaccctcacaacaatctcatcgctaca
tactcagaagatggcttactcaagttatggaagccataa

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