Styela clava (leathery sea squirt): 120329545
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Entry
120329545 CDS
T07291
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
sclv03015
mRNA surveillance pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120329545
09122 Translation
03013 Nucleocytoplasmic transport
120329545
03015 mRNA surveillance pathway
120329545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120329545
03041 Spliceosome [BR:
sclv03041
]
120329545
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
120329545
Spliceosome [BR:
sclv03041
]
Common components
Common spliceosomal components
Cap binding complex
120329545
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
MmlI
DUF2461
Motif
Other DBs
NCBI-GeneID:
120329545
NCBI-ProteinID:
XP_039252129
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MSRRRPHDARDASSEDEAEASGGNLSKRRKTTESSEEIEKRLESLICRVGEKSSSSLESN
LEGLSVVLEADLPNFKPQILRILVLCSYQLPEKCTIYTTLVGLLNVRNYNCGGDFIEMMV
RELKRLLNANQYDDARHVVKFIADLVNCHMVTPESLFGFYENLFTVIREEDVPQARRDWY
AYSILTSLPWVGALLQDQRSTELNQVLSALHEYITRKRKKIHHSFLRVWSSDEPHPQEEY
LECLWAQIVKLSDDSWAEELIPRPYRAFDGILSSSLQHNIPTFVPPPHTEGVSSYPMPKV
VFRMFDYTDCPEGPLIPGNHSIERWLIEEYLTQTIKTHRLDKKECATRLLIVPGKDKVPI
GHMIIEVLFGELFRLPSPSYPDVFFTSEFIELCKLQPSAMPQVLALASEMLFDRLDTMNY
SCIDRFINWFSHHLSNFQFRWSWDEWSECLQEDHAQPKPKFIKEVLEKCLRLSYHQRICE
NVPETFGPLLPAEPISFFKYGERIENPTEMEEAAMTASQRLVACIKQKTVESDLQLILEE
IPNSPNMSDDEKYNPIRLDALLQTLLHLAQKSFSHSCSALAKFHKLLKWAASGENGKIDA
LRVLHVVWHNHPQMIIVLVDKMVRTQIVDCAAVAKWLFSPDMASDFTRMYVWEIMHSAIR
KMDMHVKKVNIELQDTIEKAKFTKVTDDDEDEENDISKSYGLFAPSDEDIEKIREKVDTA
KAQQKNLFLIIFQRFIMILTDHLVRCRSSGKEFNTPWYKYTIDRLQQMFLMHKETVQIYM
STLENLLFTADLDQNILDVFQQFASLIR
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaagaagacctcatgatgcaagggacgcgtcatcagaagatgaagctgaagca
agtggtggaaatctctcaaagagaagaaagactacggaaagttctgaggaaattgagaag
agacttgaatcattaatttgtagagttggagaaaaaagcagttcatccttggaaagcaat
ttggaaggattgtcggttgtacttgaagcagatctaccaaacttcaaacctcaaatttta
aggattttagttttatgctcttatcaacttccagaaaaatgtacaatatacacaactctc
gttggtttgctaaatgttcgaaattacaattgtgggggggattttattgaaatgatggtt
cgtgaattaaaaagattgttaaatgctaatcagtacgatgatgctcgacatgttgtgaag
tttattgcagatcttgtcaattgccacatggttactcctgaatcattgtttggattttac
gaaaatttatttactgtaattagagaagaagatgttcctcaagctcgcagagattggtat
gcatactccatattaacttctctgccatgggttggtgctttgttacaagatcagaggtca
acagaattaaatcaagttttatctgccttgcatgaatacatcactaggaaaagaaaaaaa
atccatcacagtttcttgagagtctggtcgtcagatgaaccacatccacaagaagagtac
cttgagtgcttgtgggcacagattgtaaaactatctgatgacagttgggctgaagagttg
attccccgtccgtatcgagcatttgatggtattctgtcttcatcgttacaacacaacatt
cctacatttgttccaccaccacatactgagggagtgtcttcctatccaatgcctaaagtt
gtttttagaatgtttgattatactgattgccctgaaggtccactcattcctggtaatcat
tcaatagagagatggttaattgaggaatatctgacacaaacaatcaaaactcatagattg
gataaaaaagaatgtgcaactcgtctgctgatagttcctgggaaagacaaagtaccaatc
ggtcatatgatcattgaagttttatttggagaattatttcgtctgccatctcccagttac
cctgatgtttttttcacatcagaatttattgagttgtgcaagctgcaaccaagtgctatg
cctcaagttcttgcacttgcttctgaaatgttgtttgatagacttgatacaatgaattac
agctgcattgatagatttatcaattggttttcacatcatctcagcaattttcagtttcgt
tggagttgggacgaatggtctgaatgcttacaagaagatcatgcacaaccgaaacctaag
tttattaaagaagttcttgaaaaatgcttaagactgtcttatcaccaacgtatatgtgaa
aatgttccagaaacattcggacctctacttcctgctgaacctatcagttttttcaaatat
ggtgaaagaattgaaaatcctactgagatggaagaagctgcaatgacagcatcacagaga
ttagttgcttgcataaaacaaaaaaccgtggaaagtgatctccaacttatactagaagaa
attccaaattcaccgaatatgtcagatgatgagaaatataatccaattagactcgacgca
ctcttgcaaacactccttcatcttgctcagaaatcattcagtcattcctgcagtgcactg
gcaaaatttcacaagcttctaaaatgggctgcatctggagaaaatggaaaaattgatgct
cttagagtcttacatgtggtttggcacaatcatccacagatgatcatagtccttgttgat
aaaatggtcagaacacaaatcgttgattgtgctgctgtagctaaatggcttttctcacca
gacatggcatcagatttcacaaggatgtatgtctgggaaataatgcattctgcgatccga
aaaatggacatgcatgttaagaaagtcaacatcgaactccaagatacgatcgagaaggct
aaatttaccaaagtaactgatgatgacgaagatgaggaaaatgacataagtaaatcatat
ggattgtttgctccaagtgatgaggatattgaaaaaataagagagaaagttgatacagca
aaagcacaacaaaaaaatttgttcctgattatattccagagattcattatgatattgact
gatcatctggtcagatgcagaagttcaggcaaagaattcaatacaccttggtataaatat
accattgacagattacaacaaatgtttttgatgcacaaagagactgtacagatctacatg
tcaacgttggaaaaccttcttttcactgccgacttagaccagaatattctggatgtattc
caacaattcgcaagcttgattcgctga
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