Styela clava (leathery sea squirt): 120330811
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Entry
120330811 CDS
T07291
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120330811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120330811
03041 Spliceosome [BR:
sclv03041
]
120330811
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120330811
Spliceosome [BR:
sclv03041
]
Complex B
Other components
Prp19-related factors
120330811
Complex C
120330811
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_15
TPR_8
TPR_2
ARM_TT21
RPN7
NRDE-2
Mad3_BUB1_I
Nic96
TPR_10
DHR-2_Lobe_A
AbiH
Motif
Other DBs
NCBI-GeneID:
120330811
NCBI-ProteinID:
XP_039253689
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MPSVDELVLEEDDLPYEEEILRNPFSVKCWLRYIDHKENAPYKQLNMVYERALKELPGSY
KLWYNYLRIRRSQVKGRCPTDSMFEEVNNAHERALVFMHKMPRIWIDYCKFLVDQRCLTR
TRRTFDRCLEALPVTQHDRIWPLYIEFVKKYPIHETAVRVFRRMLKLIPEESEDYVEYLI
SIDRYDEAATKLAEIVNDESFASKHGKTNHLLWHELCELISKNPDKVHSLKVEAIIRGGL
KRFTDQLGQLWCALADYYIRSGLFERAREIYEEAIETVTTVRDFTQIFDAYAQFEESVIS
SKMEEAAEEEQNEEDDIDIELRLARFEHLITRRPLLLNSVLLRQNPHNVNEWLKRVELYE
DNLAQVINTYTEAIQTIEIPKSVGKISNLWVSFAKFYEKHDQIDDARTIFGKAVLVSYKG
VEDLATVWCEWAEMELRHENFDGAINLMKRATAMPPKRAGYFDHTEPVQNRVYKSLKLWS
MYADLEESFGTFHTCKAVYDRILDLRISTPQIIINYGMFLEDNHYFEEAFKAYERGVGMF
KWPNVFDLWNTYLTKFIARYGGKKLERARDLFEQALDGCPPKFAKNLYLLYAKLEEEHGL
SRHAMAVYEKATKAVLPEEKYDMFNIYIKRVAEIYGVTHTRPIYQRAIESLEDAQARDVC
LRFADLEQKLGEIDRARAIYAFCSQMCDPRTTAEFWQTWKTFEIKHGNEDTVREMLRIKR
SVQATYNTQVNFMSAQMLAAASNTTGTSADLAPGDPGTDEMKLLEAKAQAASAQKEKVQP
KKGILFVRSDNTQNPASEQVVTENPDEIDLDASDDEEGLPDISIKKRAVPDQVFGGIKRA
SDDEE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccatctgtagatgagctggtcttggaagaagatgacctaccttatgaagaagagata
ttgcgcaatccattctctgtcaaatgctggctgaggtacattgatcacaaagaaaatgca
ccttataagcagctcaacatggtctatgagagagctttgaaagaacttcctggaagctat
aagttatggtacaactatctacgaatcagacgaagccaggttaaaggtcgatgtcctacg
gactcgatgtttgaagaagttaataacgcacatgaacgagcgttagtttttatgcacaaa
atgccccggatttggatagattattgtaaatttcttgtggatcaaagatgtctgacgaga
acgcgtcgtacttttgatcgctgccttgaagctcttccagtgacgcagcatgatcggatt
tggccgttgtatattgaatttgtgaaaaaatatcccattcatgaaacggcggttcgagtt
tttcgtcgaatgctgaaactcattccagaagaaagtgaagactacgtggaatatttaata
tcgatcgatcgttacgatgaggcagctacaaaacttgcggaaatcgttaacgacgagagt
tttgcgtcgaaacatggaaagacaaatcatttactttggcatgagttatgtgaactcatt
tcgaagaatcctgataaagtacattcgctaaaagtcgaggcaattattcgtggtggttta
aaacgtttcactgaccaattaggacaactttggtgcgctttagctgattattacatcaga
agcggacttttcgaacgagcgagagagatttatgaagaagcaatagaaactgtgaccact
gtccgtgatttcacacaaattttcgatgcgtacgctcaatttgaagagtccgttattagt
tcgaaaatggaagaggcggctgaagaggaacagaatgaagaagatgacattgatattgaa
ttacgactcgcaaggttcgaacatttaattacgagacgtccattacttctcaatagcgtc
ctcttgaggcagaatccacacaatgtaaacgaatggcttaaacgagtcgagctttacgaa
gataacttagcacaggtcatcaacacatacacagaagctatacagacaatagaaataccg
aaatccgttggaaagatctccaatctctgggtttccttcgctaaattctatgagaagcat
gatcaaattgacgacgctcgtacaatttttggaaaagcggtccttgtgtcttacaaaggc
gtcgaagatctggccaccgtgtggtgcgagtgggctgaaatggaactacgacacgaaaat
tttgatggcgcaatcaatttaatgaaacgagcgactgcaatgccacctaaacgcgctgga
tatttcgaccataccgaaccagtccaaaatagagtatacaaatcattgaaactctggtcc
atgtacgctgatttagaagagagtttcgggaccttccatacttgtaaagctgtttatgat
cgtatcttggatctccgaatctccactccgcaaattattatcaattacggaatgtttttg
gaggacaatcattattttgaagaggcttttaaggcttatgaacgaggtgtcgggatgttt
aaatggccaaacgttttcgatctttggaatacatatttgactaaattcattgcaaggtat
ggtggaaagaaactagagcgcgctagagatctttttgagcaagctttggacggatgtcct
cccaagtttgcaaaaaatttgtatctcttatacgccaagcttgaagaagaacatgggtta
tcaagacacgcaatggcagtctacgaaaaagctacgaaggccgttttaccagaagaaaaa
tatgacatgtttaatatatatattaaacgtgtggcggaaatatacggagttacacataca
aggccgatataccaacgtgcgattgaatcactcgaagatgctcaagcgagagatgtttgt
ctccgatttgctgaccttgaacagaaactgggtgaaattgacagagcaagagcgatttat
gctttctgctctcagatgtgtgatccaagaaccacagctgaattctggcagacgtggaaa
actttcgaaataaaacacggaaatgaagacacagttcgtgaaatgttacgaatcaaacga
agcgttcaagcaacctataatactcaagtcaacttcatgtcggctcaaatgctggctgct
gcttccaacactacaggtacttcggccgatcttgcacctggtgatccgggaacagatgaa
atgaaacttctcgaagccaaagctcaggctgccagtgctcagaaggaaaaagttcagccc
aagaaaggaattctatttgttagaagcgataacacacagaatcctgcttcagaacaggtt
gtcactgagaatccagatgagatagatctagatgccagtgatgatgaggaagggttgcca
gatatttcgattaaaaaacgagccgttcctgatcaagtatttggcggaatcaaaagagct
tctgatgatgaagaatga
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