Styela clava (leathery sea squirt): 120331172
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Entry
120331172 CDS
T07291
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B-like
KO
K12821
pre-mRNA-processing factor 40
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120331172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120331172
Spliceosome [BR:
sclv03041
]
Complex A
U1 snRNP components
U1 related factors
120331172
Complex B
120331172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
KATNA1_MIT
DUF4936
Motif
Other DBs
NCBI-GeneID:
120331172
NCBI-ProteinID:
XP_039254156
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MPGPGPGGPRGPGPRHMGPGPNGQMGGPDGHGPRMGPGNFNGPPGPMLGPGFGPGPGMQG
GPGPGMNGPPMGWGPPGPMGGPMRGPMGGPMGPGMGMGMGGPPPGLGGPPPGMMPPPGMP
PPGMMPPPMGMMGGGGNPMGGPGSGGAKGQPLLTSDGTKTDWTEHKAPDGRTYFYNSVTK
QSKWEKPDELKSSTEQLLASCPWKEYKSDSGKPYYYNSETKTSVWSIPKELQEMKEKIEK
LEEEEREKRRKDEEEGKLKPKNEDSGESKDGVSPKDGEGMPSEPAGPMGQMGPGPPMGGP
MMGGGPMMDPMQMQMMMQQQMMMQQQMMMMAQQQKAQAKKARKEKKEKKEKPKSESDEDD
SESKKEEKEKDSDNDDEEATEKEAGKKKTKKEEKKEYTTKDEAKQAFKDCLKEKGVLSTS
SWEQAMKLIVNDPRYTALKKLSEKKQAFNEFKTQRGKEEKEEERQRIKDNKEKLQKFLET
SEKMTSLIRYRTADKMFADIPIWKSVEDRDRKDIYEDVIFFLSKKEKEESKELRRRNMKQ
LRKILNSLDKLSARTTWSQCQQMLMDNAAFAEDEELQNMDKEDALICFEEVIKDQEKELE
EELERRRTLERRAYRKSREAFTKLLDSFHDDGKLHSMSTWMELYPTLSAATEFNHIIGQP
GSTPLDLFKFYVEDLKSRFHDEKKIIRDILKEKGFEVGLKTTFDAFAKVVTEDKRAATLD
AGNIKLSFNSLIEKAESREKERIKEELRRQKRRESAFRNMLKITAPAIDIETTWEECRQR
LENEDAFKAITVEADRIRLFQEHIQVLQEEAKVAQEKAEREAKEKEKKKKKRKHREKKTS
SSSESESDEEKERYHAKKKKRNRSPTPESSFSESEKKAKKRKKKSKKRHHKSSDEEEKKP
KKSKEKKKKKDKNLDE
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgccaggacctggtcctggaggacccaggggaccaggcccacgtcatatgggacctgga
cctaatggacaaatgggtggtcctgatggacatggacctcgaatggggcctggaaatttc
aatggccctcctggccccatgctgggcccagggtttggtccaggacctggaatgcaaggt
ggtccaggacctggaatgaatggtccaccaatgggttggggtccacctggacctatggga
ggaccaatgcgtggtccgatgggaggacctatgggacctggaatggggatgggaatgggt
ggaccaccaccaggactgggtggtccacctcctggaatgatgcccccacccggtatgcct
ccacctggaatgatgccacctccaatgggcatgatgggaggtggaggaaatcctatggga
ggtcctggtagtggtggtgccaaaggccaacctttgctgaccagtgatggaacaaaaact
gattggacagaacacaaagcaccggatggtcgcacgtatttctataattctgtgacaaag
caatctaaatgggagaaacctgatgaattaaaatcttctacagaacaactgcttgctagt
tgcccttggaaagaatacaaatcagattctgggaagccgtattattataactctgaaaca
aaaaccagtgtgtggtcaattcctaaagaactccaggaaatgaaagaaaaaatagaaaaa
ctggaggaggaagaacgtgagaagaggagaaaggatgaagaagaaggaaagctgaaacca
aagaatgaagatagtggtgaatcgaaagatggtgtcagccctaaagatggtgaaggcatg
ccgagtgaacctgctggcccaatgggccaaatgggacctggaccaccaatgggcggccca
atgatgggcggtggaccgatgatggatccaatgcaaatgcagatgatgatgcagcaacaa
atgatgatgcaacagcaaatgatgatgatggctcagcaacagaaagcacaagcgaaaaag
gcaagaaaagaaaagaaagagaaaaaagaaaaacccaaatctgaatctgatgaagatgat
tctgaatcgaagaaagaggagaaggaaaaagattctgacaacgatgatgaagaagccact
gaaaaagaagcggggaagaaaaaaacgaaaaaagaggagaaaaaagaatacacaacgaaa
gatgaagcgaaacaagccttcaaagattgtctgaaagagaaaggtgtactctcaacttct
tcatgggaacaggctatgaaattaattgttaatgatccgcgctacactgcattgaaaaaa
ttaagtgaaaaaaagcaagctttcaatgaatttaaaacacagaggggaaaagaagaaaaa
gaagaggaaaggcaaagaattaaagataataaagaaaaactacaaaagtttttggaaacg
agtgaaaaaatgacaagtctaatacgttatcgtactgctgataaaatgtttgccgatata
cctatatggaaaagtgttgaagaccgtgatcgcaaagatatttatgaagatgtgatattt
tttctttccaaaaaagaaaaggaagaatcaaaggaattacgtagaagaaatatgaaacag
cttcgcaagatcttgaacagtcttgataaactctccgcaagaacaacatggtctcagtgc
caacaaatgttgatggataatgctgcttttgcggaagatgaagaactccagaatatggat
aaagaagacgctttgatttgctttgaagaagtcattaaagatcaagaaaaagaattagag
gaagaacttgagagaagaaggacattggaacgacgggcatacaggaaaagcagagaagct
tttaccaaacttctcgatagtttccatgatgatggaaaacttcattctatgtcaacatgg
atggaactttatccaaccctatctgcggccacagaatttaatcatataattgggcagcct
ggctctacacctctggatttgttcaaattttatgtggaagacctcaaatctcgttttcat
gatgaaaagaaaattatacgcgatattttgaaagaaaaaggatttgaggttggtttgaaa
acgacttttgatgcattcgctaaagttgtgactgaagataaaagagcagctactcttgat
gctggaaacatcaaactatcatttaatagtttaatagaaaaggcagaatcgagagaaaaa
gaaagaatcaaagaggaacttcgacgacagaaacgaagggaatctgccttccgtaatatg
ctcaaaattactgctccagcgatcgacatagaaacgacatgggaggaatgtcgtcagaga
ctcgagaatgaagacgctttcaaagcaataacagtggaagcagatcgaatccgtctcttt
caagaacacattcaagtcttgcaagaagaagcaaaagtcgcacaggaaaaagcggaacga
gaagcgaaagaaaaagagaaaaagaagaaaaaacgaaaacacagagaaaagaagacatct
tcttccagcgaatctgaatcagatgaagaaaaagaacgatatcatgccaagaaaaagaaa
agaaatcgatcacctacccctgaatctagtttttctgaaagtgaaaagaaagcaaagaaa
cgaaaaaagaagagtaagaaacggcatcataaatcttcagatgaggaagaaaagaaacct
aaaaagagtaaagaaaaaaagaaaaagaaggataaaaacctagatgaataa
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