Styela clava (leathery sea squirt): 120331271
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Entry
120331271 CDS
T07291
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03020
RNA polymerase
sclv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120331271
09124 Replication and repair
03420 Nucleotide excision repair
120331271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120331271
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120331271
Enzymes [BR:
sclv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120331271
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120331271
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120331271
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120331271
NCBI-ProteinID:
XP_039254275
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MFQDDDLELRDGEDEEDISPELWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDAPMIELQAEAQHTTTELVTPTKYHLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT
YSAPLYVDITKTVIKHNEEPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMAANTVYVFKKKDSKYAFTAEIRSCLEHSSRPTSTMWVNM
LARGGQGVKKSAIGQRITAIVPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEIME
MVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCET
KKAYFLGYIVNRLLVAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKMLMKEVRLYA
QKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTL
SHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPS
PILEFLEEWSMENLEEISPSAIADATKIFVNGCWVGIHRDPDQLMNTLRKLRRQMDIIVS
EVSMVRDIREREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKESEYNNYSWQDLVAS
GVVEYIDTLEEETIMLAMFPEDLQDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAI
VAISTYTGYNQEDSIIVNKSSIDRGLFRSVFYRSYKDAESKKAYDQEETFERPERSSCSG
MRHAIYDKLDDDGLISPGVRVSGDDVVIGKTVTLPENDDELEGTTRRYTKRDASTFLRTS
ETGIVDQVMVSINQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRSEDMPFTCE
GIQPDLIVNPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVNVQKISNLLHDYG
YQQRGNEVLYNGHTGHKINTQVFFGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRS
RDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAIANLRSHTFECRG
CKNKTHISQVRMPYACKLLFQELMSMSIAPRMMVT
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacgatgaccttgaactgagagatggggaagatgaagaggatatctcgcct
gaattatggcaggaagcttgctggattgttatcagctcttactttgatgaaaaaggtctt
gtccgtcaacagctggactcgttcgatgaattcattcaaatgtccgtgcagagaatcgtg
gaggatgctcccatgattgaactccaagccgaagcgcaacacaccaccacagagcttgta
actccaacaaaataccatctcaaattcgagcaaatttatttgtcgaagcccactcattgg
gaaaaagatggcgctccaagtcctatgatgcctaatgaagcacggctgcgaaatttaacc
tattctgcacctctttatgtcgatattacaaagacagtcataaaacataatgaagaacca
atagagacacagcatcaaaaaacttttatcggaaaaatcccgattatgttacgatcaact
tattgtttactgagtaacttgactgatcgtgatttgactgagttaaatgaatgccccctt
gaccccggaggttattttataattaacgggtcagaaaaagtattaattgctcaggaaaaa
atggccgccaacactgtatacgtcttcaaaaagaaagattcaaaatatgctttcactgcc
gaaattcgaagttgtttggaacacagttccagacccaccagtactatgtgggttaatatg
cttgctcgtggtggccaaggggttaagaaaagtgcaattggacaaaggattactgctata
gtgccgtacattcgtcaagagattccgattattattgtttttcgtgccctcggatttgtg
tccgatcgtgatatccttgaacatattatttacgattttgacgatccagagattatggaa
atggtgaaaccgtctttagatgaagctttcgtcattcaagagcaaaacgttgcgttgaat
ttcattggatctcggggtgctaagccaggagttacaaaagaaaagagaatcaaatatgca
cgtgagattcttcagaaagagatgttgcctcacgtcggaattagtgatttttgcgagacg
aaaaaagcctattttcttggttatattgtgaatcgactactagtggcagcccttggacga
agagaacttgatgatcgtgatcactatggcaacaaacgtcttgatcttgccggtcctctg
cttgcgtttttattccgcggacttttcaaaatgttaatgaaagaagtacgactatacgca
caaaagttcatcgacagaggaaaagactttaacttggaacttgcaataaaaacaagaata
atcactgacggactgaaatactctcttgcgaccggaaattggggtgaccagaaaaaagcg
catcaagctcgcgctggtgtgtcccaagtacttaataggttgacttacgcttctacgctc
tctcatctcagaagactgaattcccctattggacgagatggcaagcttgcaaaacctaga
caattacataacacattatggggtatgatatgccctgctgaaaccccagaagggcatgct
gtaggcttggtgaaaaatttggcactcatggcgtatatttccgtcggctcacaacccagc
ccaattttggagtttctggaagaatggtctatggaaaatttagaagaaatttcaccctct
gcaatcgctgatgcgacaaaaatttttgtgaatggctgttgggttggaattcatcgagac
cctgaccaattgatgaacacattacgaaaactacgtcgacaaatggatataatcgtttcc
gaggtttcaatggtacgagacatccgtgaacgtgaaatccgaatttatactgacgctggt
agaatttgtcgtccgttgttgatcgttgaaaaccaaaaattattgctcaaaaaacgtcac
attgatctgcttaaagagagcgagtacaacaattacagttggcaggatttagtcgcgagt
ggggtggtcgaatacattgacactctagaagaggagacaatcatgcttgccatgtttccc
gaggacttgcaagacaaaggagaacagtattgttcgacttatacacattgtgaaatccat
cccgctatgatacttggcgtatgcgcttccattatcccgtttcctgatcataaccaatcc
ccacgtaacacgtaccaaagtgctatgggaaaacaagccatgggggtgtacatcacaaat
tttcatgtacgtatggacacactagctcatgtgttgtattacccgcaaaaaccactcgta
acgactcgttccatggagtatttgcgtttccgagaacttcctgcagggataaacgcaatc
gtcgcgatttctacatacactggatataaccaagaagattctattattgtgaataaaagt
tccatagatcgcggacttttccgatccgttttttatcgttcgtacaaagacgctgaaagc
aagaaggcttacgaccaagaagaaacattcgaacgccctgaaagatcttcatgcagtgga
atgcgacatgcgatttacgataaacttgatgacgatggtttaatctctcctggcgttcgt
gtttcaggtgatgatgttgttatagggaaaacagttacacttccggagaatgacgatgaa
ttagaaggcacgactcggcgttatacaaaacgtgacgcgtcaacttttcttcgaacaagc
gaaactggaattgtggaccaagtaatggttagtataaaccaagatggatataaattcacg
aaaatccgagtacgttcagtccgagtccctcaaattggagacaaattcgctagtcgtcat
ggacaaaagggtacgtgtggtattacgtaccgttccgaggacatgccattcacttgtgaa
ggaattcagcctgatttaatagtcaacccccatgctatcccatctcgtatgacaattggc
catttaatcgaatgccttcagggaaaagtgtcggcaaataaaggtgaaatcggtgacgca
acaccttttaacgacacggtaaatgtccaaaaaatttcgaatcttttgcatgattatgga
taccaacaaagaggcaatgaagtgttatacaatggccatacagggcataaaatcaacacc
caagtattttttgggccgacatactatcaacgtttaaaacacatggtagatgacaaaatc
cattcaagagctcgtggaccagttcaaattttaaacagacagcccatggaaggacgatca
agagatggcggactccgattcggagagatggaacgcgattgtcaaatcgctcacggtgct
gctcaatttttacgagagcggttatttgaagcttctgatccataccgtgtccatgtttgc
aatctttgtggcctaatcgcgattgcgaatctacgatctcacacttttgaatgcagaggg
tgtaaaaataaaacccatatctcgcaagttagaatgccgtacgcttgcaaattactcttc
caagaactgatgtcaatgtcaatcgcacctcgtatgatggtcacatga
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integrated database retrieval system
