Styela clava (leathery sea squirt): 120332328
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Entry
120332328 CDS
T07291
Name
(RefSeq) ATP-dependent DNA helicase Q5-like
KO
K10902
ATP-dependent DNA helicase Q5 [EC:
5.6.2.4
]
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120332328
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120332328
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
120332328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SRI
ResIII
AAA_30
Motif
Other DBs
NCBI-GeneID:
120332328
NCBI-ProteinID:
XP_039255486
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MATGYKKQTPGQRKHIPCILNTLMNIFKHKQFRSDLQRNAIETICKGNQDAFVSMPTGAG
KSLCFQLPAIYLGGVTIVISPLIALMQDQLEHMRKLKIPAETLNSKQTQADRKKTMADLM
SDSPKTRLLYITPEQANTTTFLDIIKHLKIKKQLSLFVIDEAHCVSHWGHDFRPDYMKLG
SLRSKLGDVPFIALTATASPKVEKDIISSLQLRKPLATFKSGVFRPNLFYSLKYKDILKD
PYLDLKTLALKAMGPKSFDGTHEGCGIVYCHKRDDCTLVAGQLLRRGLMARAYHAGLKDK
DRTQVQEDWMNGKISIIVATISFGMGVDKANVRFVAHWTMPKSMANYYQESGRAGRDNKT
AYCCLYYSRKDRDLMSFLMRNEVQRKKNKLGDSAYKRYSATVTGHFQSMVKYCENINCRH
ESISLFFGNKAPECNSMCDHCHDLKAFKKHHDDFQKTQLSSVGRTRMGEKTEKIACPTGN
FDPELYAGGKKGFGFDRTVEDDWGEGGSGGGSNDITSKDWSEFFKEQFSMRKSATQTKTQ
RKRSKESDEDWPDDCPLIKPESNRLPKCTWKIRKGCYDRLHVTLTSNYQATQGKSDASDW
ESHCAAADLEFEIFSTAKNLMIYRAHVVRKVNEIRKMTTEKKLHEQFEKSKNGDSKSRSK
QSCDSEKEDFQQSTTLKRKRASHMYSLCGVDNPTGDAFQTAANLLKDNKMNQEENSTLEK
SAKCEPPLKKTAITFDDKVQCKSIERYIKPNTSYKKSSKKLTKSNQNKCDTVKIAEAQQN
VAKDESEPPSKKRLSSSEKPTQTQKTAILKTCDKKSDVSNNEKKFSIRDWFNSSSAKKHE
VSNKSETKEIVDLTLSDSDDSDEEERLFGRSTPSPVSPINIKTEKPDKLKIREIEKMSDS
SSEDESDDGPVIVSAYNRYQTGPLIDLSDSEDEIEKSQSEETDNLFTGITSLDKMSSASN
EDRTPERDTPSFLKCSDSKELENNKSKSDKTIFEQILNGDDKDLQFSTSFVSKSEDSSSD
PIDSSNVTQPLSQQRKTSSEKSEQIINITSENVSQISPCSFVSTSDDLTTPFVRPVSGDE
PKATIVTTSSNDKLKIHPFNDQLTPKVESEVNNDSHPHSLHTQQEDSKKFNFKRELNNNT
ERVAIKSESPVSDTTINKPSDAKTRFNLTVSLECGQQNQETAVASFRKASKEILKIVDGL
PALKAICETSSTNVFQDVGNRNDSSPLLKVLEQPEPREDLSFHDKDDRLLYNLPMKQLDS
KVDEQSKPKNVPEIKNDKRLKEISDIVIRYLSPFYKRGFIKNKDLFKSFAKKLTNLMLME
ASMVEKDEKKIARDIVDNFFKHCTKLKSENDLVKLENIFKNFMKSYG
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggcgactggatataaaaaacaaacaccaggacaaagaaaacatattccatgtattctg
aatacattaatgaatattttcaaacacaaacaatttagaagcgacttacagaggaatgcg
attgaaacaatttgtaaaggaaatcaagatgcatttgtttccatgccaacaggagcaggg
aagtcgttatgttttcagttacctgctatttatctgggtggagtcaccatagtaatatca
cctttgattgctctaatgcaagatcaactggaacatatgaggaagttgaaaattccagcg
gaaacactcaattctaaacaaactcaggctgataggaaaaaaacaatggctgacctaatg
agtgattccccgaaaacccgcttgctttatataacacctgagcaagcaaatacaacaaca
tttcttgatattataaagcatttgaaaattaaaaaacaattatcattattcgtgattgat
gaagctcattgtgtatcccattggggtcatgacttcagaccagattatatgaagcttgga
tcacttagatcaaaactaggagatgttccttttattgcattgactgcaactgcttctcca
aaagttgaaaaagatatcataagttcactgcagttgcggaaacctcttgctacttttaaa
agtggagtgttcagaccaaatttattttattcgctaaaatataaagacattctgaaagat
ccatatttggatttgaagactttagcactcaaggcaatgggaccaaaatcttttgatgga
actcatgaaggatgtggaattgtgtattgtcataaaagagatgattgtacattagttgct
gggcaactcctacgcagaggactcatggctagagcgtatcacgcaggtcttaaagacaaa
gatagaacacaagtacaagaagattggatgaatggaaaaatatcaatcattgttgcaact
attagttttggaatgggtgttgacaaggctaatgttagatttgttgcacactggacaatg
ccaaaatcaatggcaaattattatcaagaatcaggtagagcaggaagagataataaaact
gcatattgttgtttgtactattccagaaaagatcgagatctgatgtcttttctgatgcga
aatgaagtccagagaaaaaaaaataagttaggagactcagcatacaaaagatactctgct
actgtgacaggacatttccaatcgatggttaaatattgtgaaaatatcaattgtcgccat
gaatcgatttcactattctttggcaataaagcacctgaatgtaattctatgtgtgatcat
tgtcatgatttgaaagcattcaagaaacatcatgatgattttcaaaagacacaattatcc
agtgttggtcgtactcgcatgggggaaaaaactgaaaaaatcgcatgtcctacaggaaat
tttgatccagaattgtatgcaggaggaaagaaaggatttggctttgatagaacagtagaa
gatgactggggagaaggaggttctggaggtggcagtaatgatattacttcaaaggattgg
tctgaatttttcaaagaacagttttccatgagaaagagcgctacacaaaccaaaactcaa
aggaaacgttccaaagaatctgatgaagactggcctgatgattgtccactgattaaacca
gaaagcaacagacttccgaaatgtacctggaagattaggaaaggatgttacgacagactt
cacgttactttgacgagtaattaccaagcaactcaaggaaagtctgatgcaagtgattgg
gaatctcattgtgctgcagcagatctggaatttgaaatattttcaactgctaaaaatttg
atgatttatcgagctcatgttgtaagaaaagtaaatgaaattagaaagatgacaacagaa
aagaaattacacgaacaatttgaaaagtctaaaaacggtgattccaagtccagatcaaaa
cagtcttgtgactctgaaaaggaagatttccagcaatcaactactctaaaacgtaaaaga
gcaagtcatatgtattctctctgtggtgtggataacccaacaggagatgcttttcaaact
gctgctaatttgctaaaggataacaagatgaatcaggaagaaaattctacattagaaaaa
tctgctaaatgtgaaccaccattgaagaaaacagctatcacttttgatgataaggtgcaa
tgcaaatccatcgagagatatatcaagcccaatacatcgtacaaaaaatcttcaaaaaaa
ctaactaaatcgaaccaaaataagtgtgatactgtgaaaatagcagaagctcaacaaaat
gttgctaaagatgagtcagaaccgccttctaagaaacgtttgtcatcttctgaaaagcca
actcaaacacagaaaacagcaattttaaaaacatgtgataaaaaatcagatgtaagcaac
aatgagaaaaaattcagcatcagagattggttcaacagttcttcagctaaaaaacacgaa
gtctctaataaatcagaaacgaaggaaattgtagatcttacactttctgattcagatgac
tcagatgaagaggaacgattatttggaagatccactccaagtcctgtgagtcccattaat
ataaaaacggaaaaacctgataaattgaaaatccgagaaattgaaaaaatgagtgatagt
agctctgaagatgagagtgatgatggccctgttatcgtgtcagcgtacaatcggtaccaa
actgggcctctgatcgatttgtcagactctgaagatgaaattgaaaaatctcagtcagaa
gaaacagataatttatttactggaattacatcactggataaaatgtcttctgcctctaat
gaggataggacacctgaaagggatacaccttcatttctgaagtgttctgatagtaaggag
cttgaaaacaataaaagtaaaagtgataagactatatttgaacagattttaaatggtgat
gataaagatttgcagtttagcacatcgtttgtgtccaaatctgaggattcttcaagtgat
ccgattgattcatcaaatgtcacgcaacctctttcccaacaacggaagacgtcaagtgaa
aaatctgagcagatcatcaatatcacctcagaaaatgtgagccaaatatcgccatgcagc
tttgtttctacctctgatgatctaacaaccccatttgtgaggccagtttctggtgatgag
cctaaagcgacaatagttactacatcttcgaatgataaattgaaaatacatccctttaat
gaccagctgacaccgaaggttgaatcagaagtaaacaatgattcacatcctcattccctt
cacacacagcaagaggattcaaaaaagttcaattttaaaagagaactgaataataacaca
gaaagagttgcaataaaaagtgaatctccagtttctgacactaccattaataagccctct
gatgccaaaactaggttcaatctgacagttagtcttgaatgcggacaacaaaatcaagaa
actgctgttgcgtcatttcgtaaagcaagtaaagaaattctcaaaatcgttgatgggtta
cccgccttaaaagcaatctgtgaaacatcatcaacgaatgtttttcaagatgttggtaac
agaaacgattcatcgcctttgcttaaagtgcttgagcaacctgaaccacgcgaagacttg
tcgttccatgacaaagatgatcgcttattatacaatttgccaatgaagcagttagacagc
aaggttgatgagcagagcaaacctaagaatgttccagaaataaagaatgacaaaagattg
aaagaaatttctgatattgtcatcagatatctttcacctttttataagagagggttcatc
aaaaataaagatttgttcaaaagttttgcaaagaaattaacaaatttaatgttgatggaa
gcctcaatggttgaaaaagatgaaaaaaaaatcgcaagagatattgttgacaactttttc
aagcattgcacgaagcttaaatccgaaaatgatttggtcaaattggaaaacattttcaaa
aatttcatgaagagttatggataa
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