Styela clava (leathery sea squirt): 120332382
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Entry
120332382 CDS
T07291
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120332382
09123 Folding, sorting and degradation
03018 RNA degradation
120332382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120332382
03041 Spliceosome [BR:
sclv03041
]
120332382
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120332382
mRNA degradation factors
5'-3' decay
Lsm complex
120332382
Spliceosome [BR:
sclv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120332382
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
120332382
NCBI-ProteinID:
XP_039255549
LinkDB
All DBs
Position
Unknown
AA seq
132 aa
AA seq
DB search
MLPLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNINLREVICTSRDGDHFWKMPECY
IRGSTIKYLRIPDEIIDMVKEENFSKGRGRGRGPRGRGGGPNRGGFGGRGRSQGGGRGGQ
GGKKPQRPKPQE
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgttacctttatctttattaaagacggctgtgaaccatcccatgctggtggaattgaag
aatggagaaacgtataacggacatcttgttaattgtgataattggatgaatattaatctg
agggaagtcatctgcacttcaagagacggcgaccatttttggaaaatgccggagtgttac
atacgaggcagcacaatcaagtatctacgaattcccgatgaaattatcgacatggtaaaa
gaagaaaatttctctaaaggtcgcggaagagggcgaggtccaaggggccgtggaggaggc
ccgaatagaggtggatttggaggtcgtggaaggtcacaagggggaggacgtggaggccag
ggagggaaaaaaccacaaagacccaaaccccaagagtga
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