Styela clava (leathery sea squirt): 120332409
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Entry
120332409 CDS
T07291
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120332409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120332409
03041 Spliceosome [BR:
sclv03041
]
120332409
03036 Chromosome and associated proteins [BR:
sclv03036
]
120332409
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120332409
Spliceosome [BR:
sclv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120332409
Complex B
120332409
Complex C
U2 SnRNP specific factors
120332409
Chromosome and associated proteins [BR:
sclv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120332409
TFTC complex
120332409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120332409
NCBI-ProteinID:
XP_039255580
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MFLYALTLQRASTITHAVHGNFSGTKQQEIALSRGKILELVKPDPNTGKVHTLLTVEVFG
IIRALMSFRLTGGNKDYVVCGTDSGRICILEYIPNKNKFDRVHMETFGKSGCRRIVPGQY
LAIDPKGRAVMIGSMEKQKLVYILNRDSEARLTISSPLEAHKANTLVYHMAGIDVGFENP
MFACLEMDYEEADNDPTGEAAQLSQQTLTFYELDLGLNHVVRKYSEPLDERANHLVTVPG
GNDGPGGVLVCAENYITYKNFGDQPDIKSPIPRRRNDLDDPERGMMFVCSATHKTKSMFF
FLVQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVATAMCVLRTGFLFVASEFGNHALYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFYAPRPLRNLVMVDELDSLSPIMACQIADLANEDN
PQLYVTCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKVTEDDEFDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGENALVQVYPEGIRHIRFDKRVNEWKAPG
KKTILKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSSDVLCMDLGKVPPGEQ
RTRFLAVGLADNTVRIISLDPSDCLQPLSMQALPATAESVCIIEMGGGEDETGEQRPSGG
LVLNIGLQNGVLLRTTLDNVTGDLSDTRTRYLGTRPVKLFRVSMQGSDAVLGMSSRTWLS
YQYQNRFHLTPLSYESLEFASGFASEQCPEGIVAISANTLRILALEKLGTVFNQVSTGLQ
YTPRRFVVHPDSNHLIILETDHNSYTEETKDQRKHQMAEEMIEAAGEEEKELAQEMAAAF
LREVLPEDKFSSPKAGPGMWASQIRVLNPSTGETTEKISLEQNEAAFSIAICRFNNYGDQ
WFVLVGVGHDLQLNPRQVKSGEIHTYKFNEEGTSLELVHKTPVDEVPQAICAYQGRVLIG
VGKLLRVYDLGKKKLLRKCENKHIPNRIVSLHAIGQRVLVCDIQESVHWVRYRRSENQLV
IFADDTYPRWVTSATLLDYGTAAVGDKFGNICILRLPSDVNDDVQEDPSGTKALWTRGLL
NGASQKCDVLCSYHVGEIVLSLQKATLIPGGSESLVYTTISGGVGMLVPFTSHEDHDFFQ
HLEMHMRNESSPLLGRDHLAYRSFYFPLKNVIDGDLCELFNSMDSAKQNSVAEELDRNPA
EVSKKLEDIRTRYAF
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctatgctctcacacttcaacgagctagcacaataacgcatgctgtccatggg
aatttttctggcacgaagcagcaggagattgccctgtctagaggaaagattttggaactt
gtcaaacctgatccaaatactggaaaagttcatacgttgttgacggtcgaagtttttggc
attattcgtgctttgatgtcatttcgattaactggtggtaacaaggattatgtcgtctgt
ggaacagattcaggaagaatttgtattttggagtatattcctaacaaaaacaaatttgac
agagttcatatggaaacatttggaaagagtggatgcagaagaatagtaccaggacaatat
cttgccattgatccaaagggaagagcagttatgataggttctatggagaaacaaaaactg
gtgtatatcctgaatcgggattccgaggctcgtttgactatttcttctcctctggaagca
cataaagctaacacactcgtgtatcacatggctggtattgatgtaggatttgaaaaccca
atgtttgcatgtttggaaatggattatgaagaagccgataatgatcctacaggagaagca
gcacaactttcccagcagaccttaacattctatgaacttgatcttggactgaaccacgtt
gtaagaaaatacagcgaacctttagacgaacgtgcaaatcatttggtcactgtaccaggt
ggtaacgatggacctggtggcgttcttgtatgtgctgaaaattacattacttacaaaaat
ttcggtgatcaacctgatatcaaatctcccattccaagaagaagaaatgacttggatgat
ccagagagaggaatgatgtttgtgtgcagtgcaacacacaaaaccaaatctatgtttttc
tttctggttcaaactgagcaaggagacattttcaagataactcttgaaacagatgaagat
atggtgactgaaatccgattaaaatacttcgatacggtacctgtagcaacagcaatgtgt
gtactgaggactggattcctgtttgttgcttctgaatttggaaatcatgcgttatatcaa
attgcacatcttggtgatgatgatgatgaaccagaattttcaagtgcaatgccgttggaa
gaaggagatacattcttttatgcacctcgaccactcagaaatcttgtcatggtcgacgaa
cttgattctctctcaccaattatggcatgccagattgctgatttggcaaacgaagacaac
ccacaactttatgtaacgtgtggcagaggtccgaggtcatccttacgtgtattaagacat
ggtttagaggtgtcagaaatggctgtatcagaattgcctggtaatccaaatgctgtatgg
acagtcaaagttactgaagacgatgagtttgactcgtacattattgtgtctttcgtcaat
gcaacacttgttttgtcgatcggggagactgtagaggaagttacagattcagggtttctt
ggaacaacccctactttatcctgctcactcttgggagaaaatgctcttgttcaggtttat
cctgaaggaatccgtcatatcagatttgacaaacgtgttaacgaatggaaagctcctgga
aagaagactattttaaaatgtgctgtcaatcagagacaagttgttattgcattgacaggc
ggggaactcgtatacttcgaaatggatcctagtggacagctcaacgagtacactgaaaga
aaagagatgagtagtgatgtattatgcatggaccttggcaaagtgcctcctggtgaacaa
agaacaagatttcttgcagttggactggctgataatactgtcagaattatatcgctcgat
ccatcagattgtcttcaacctttgagcatgcaggcattaccagccacagcagaatcagtt
tgcattattgagatgggaggcggagaagatgaaaccggcgaacaaagaccttctggtggt
ctggtactgaatatcggacttcagaatggtgtgttgctacgaacaacattggataatgta
actggtgatttatctgatacaagaacaagatatcttggtaccagacctgtcaaattattc
agagtctcaatgcagggttccgacgcagtgcttggaatgtcgagcagaacttggctcagc
tatcaatatcaaaatagatttcacttgacaccattatcatacgaatcactagaatttgca
tcaggttttgcttctgaacaatgtccagagggaatagttgccatctctgctaacacacta
aggattctggctcttgagaaattgggaactgtcttcaatcaagtgtcaacaggattgcag
tacacacctagaagatttgttgttcatcccgattcaaatcatcttattatacttgaaact
gatcataactcgtacacagaagaaacaaaggaccaaagaaaacatcaaatggctgaggaa
atgattgaggccgctggtgaagaagaaaaagagttagctcaagaaatggctgctgcattt
ttgcgagaagttttgccagaagataaattcagttcaccgaaagctggacctggaatgtgg
gcttcacaaattagagttctaaacccttccacgggagagaccactgaaaaaatctctttg
gaacaaaatgaagcagcttttagcattgccatttgtcgtttcaataattatggagatcag
tggtttgttcttgttggggtcggacatgatcttcaactcaatccaagacaggttaaatcc
ggtgaaatccacacttataagttcaatgaagaaggcacgtcattggaacttgtccataag
acaccagttgatgaagtaccacaagctatctgtgcttatcaaggaagggtattgattggt
gttggaaaattgttacgtgtttatgatcttggaaagaagaaactattgagaaaatgtgaa
aacaagcacattccaaatcgcattgtctcattgcacgctatcggacaacgtgttctagtt
tgtgacattcaagaatccgtgcactgggttcgttacagaagatcggagaatcaactcgtt
atatttgctgatgatacttatccaagatgggttacttctgctactttacttgattacggc
acagccgctgtcggggacaaattcgggaatatttgcattcttcgtctaccatccgatgtg
aatgatgatgtacaagaagatccaagtggcacaaaagcattgtggacgagaggattgctt
aatggtgcatcacaaaagtgcgatgtactttgttcatatcatgttggtgagattgtactt
tcattacaaaaagcaactttgattcctggtggttcggaatctttagtttatacaacaata
tctggtggagttgggatgctggtgcctttcacttctcatgaggatcacgactttttccaa
catttggaaatgcatatgagaaatgaatcatcgccgttactaggtagagatcatcttgcc
tacagatcgttctattttccactcaagaatgttattgatggagacttgtgtgaattgttc
aactcgatggacagtgccaagcagaacagtgttgctgaagaactggatagaaatcctgcc
gaggtttccaaaaaattggaggacatcaggaccagatatgcattttga
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integrated database retrieval system
