Styela clava (leathery sea squirt): 120332444
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Entry
120332444 CDS
T07291
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120332444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120332444
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120332444
mRNA degradation factors
5'-3' decay
Decapping complex
120332444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
NBCH_WD40
DUF922
Motif
Other DBs
NCBI-GeneID:
120332444
NCBI-ProteinID:
XP_039255621
LinkDB
All DBs
Position
Unknown
AA seq
1480 aa
AA seq
DB search
MDLSNGKEEESADVLTNQLKGMLKINGNSGDSEIQESEPSPKTENSEVDSKKDAVEEEPS
GSLDVGGSQRIDLSQVKDGECVSIYGDQVSIITSGNADMEADTSGSDKVRISPITKFEWE
HKYYPGTLVSVTNDYTAYAIKSRSYAVRVISRKNTSDRLLLRGFTAPVCDVAFAHPTSSL
ISAVDEEGNFIIWQLSQNGDSTMSTKKLHVKSSDPSASLYHRLVWLTYMHCEIDGTNPEE
ELLKLDDDTEADPLNQRRLLVVTHGNIVEIWDINCAFEIAHDDENETDRSKLSSTFMTIK
GHDDVITDCELSPEGSVVAVASHDGYVKFWQVSIESTEEPTCLHRWKPHGDRPVSLVTFC
DDRKQPQLVLYWRFMLTGCSQNNELKIWCTVSWTCLQTITFESPPVTSSSLPALKCGLHA
ASDYLIVSDINRKVMYVMGCVTDLEQGRASLNSIAQYFLTTPLLSFAIVDAQKYKFKNLV
AMDEEETEDRNGEQAEAAHDSDDENSDDDDGENNTDKQNNDVEKRINGVLIKLVSIHTKS
LQSLDIRFIPNTLANDDSMGLSTYNTVSDELNIVSVDESLSVISPSLDNGQSMDDLMEVP
QQEEEDEEEGDSSKNKTALTANEGDQSTLLAVDETDMTEKDEMQESAKSVAEPISLSTNE
PIRTTVMDLVGDVTDELPVAHSSPSGGRQYSMQEDSLNRGQGEGEASASPDKPDSHPVLL
TPEAFTSSLKKPDDLVSVDSTFTHVTPFSVDHPSLFGSEINKSMQESTHQKSPLLPTSSS
ITPPPPTFPSSVSASGNVKGMLFKSPELESPKIQSTTPLVSLSTSQASIEMGPTSSYHSI
LHSLPMNEPGPFGDVQNTRFMMSKSKDKSPDLISSASTIENVIVSSSEARVLIGGPLAGA
VGGSGDSLFMTGHPKVSQDFDAESIGSNTSKKSSSSMPPMSSAPWPKAPDVTMSRPSIRK
PTNSSTTRDDFLRASDLSQSQVTVRPDSVLHADQRADDQIKPQSSYNAKMGADLLAAIVN
LQKQQEDLMKSHQKEINKKTNQIMKNVDVALKKFDQQQNEKLERALKSMSDSQRKFQAET
RANMASANEQAVGKMERSIKHEVKNTVLPGLSRSLDPLKDQLHSSFAQKLTATDSVLKDS
LGKLVRSKETVEAIGNSTGRAIQSQVHSAFRDSFTQIVVPMMEKSCNNMFVQLSTVFQKG
MDEVVLKLEKQIQSRVKVDLDRLQSTEKQAREATAELRDVAGHARTKITTAVEQDMRTLI
NSEMKSAQETLIAEMSKSFQRQNELALKEQKALLTQCIRTTMAEMPIQQHQIRTKLPGDK
TNHPSTPGRSPGPLRPTFEMQQQAILNLLHQGNLNSAFQRALTASDLALVMYVCETVDPA
IVFGTVPCPLHQPILLSLIQQLSCDLGRNTTTKMKYLQEAVMNLDSSHQVTQEHMQGVLE
ALVKNLEAHVATLVSSPTDASNTPVIKQMRMLAMAAKSLI
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggatctttcaaatggaaaagaggaggaatctgcagatgttctcactaaccaactgaaa
ggaatgttgaaaattaatggaaattcgggagattctgaaattcaagaatcagaaccctca
cctaaaacagaaaattctgaagtcgattcaaagaaggatgctgtggaagaagaaccttcc
ggatcattggatgtgggtggttctcaaagaattgatctgtcccaagtaaaagatggtgaa
tgcgtttccatatatggtgatcaagtctcgataataacaagcggaaatgccgatatggaa
gcagatacctctggaagtgacaaggtcagaattagtccaatcacaaagtttgaatgggaa
cacaaatattatcctggaacattggtatccgtaacaaacgactatacagcatatgctatt
aaaagtcgatcatatgcagttcgtgtcattagtcggaaaaacacatcggatcgtttgtta
ctacgtggatttactgctccagtgtgcgatgttgcttttgctcatccgacatcttctctc
atatcagcagttgatgaagaaggaaattttataatttggcaactatcacaaaatggggac
agcactatgtctacgaaaaaacttcatgtgaagtcttcagatccgagtgctagcctgtat
cacagattagtatggttaacatacatgcattgtgaaatagatggcactaatccggaagaa
gaattattgaaattagatgatgacacggaggctgatccactaaatcagaggagacttctt
gttgtcactcatggaaatattgttgaaatatgggacattaattgtgcatttgaaatagct
cacgatgatgaaaatgaaactgacagatcaaaattgtcatcaacatttatgacaataaag
ggacatgatgatgtaataactgactgtgaattgtcaccagagggcagtgttgttgcagtc
gctagtcatgacggatatgtgaagttctggcaagttagtatagagagtacagaagaacca
acatgtctgcatcgttggaaacctcacggtgatcggccagtatctctcgtcacattttgt
gatgataggaaacaaccacaactggtgttgtactggaggtttatgttgactggttgcagc
caaaacaatgaattgaaaatctggtgcactgtgtcatggacttgtcttcaaactataact
ttcgagtctcctcctgtgacttcatcgtcattacctgcattgaaatgcggtctccatgca
gcttctgattatctcattgtttcagacattaacagaaaggttatgtacgtcatgggttgt
gtcactgaccttgaacaaggtcgtgcttcattaaattctattgcgcaatattttttgaca
acaccacttctgagttttgcaattgtggatgctcagaaatataaatttaagaatcttgtt
gcgatggatgaagaggaaactgaagatagaaacggagaacaagcggaagcagctcatgat
tctgatgatgaaaattcagatgacgatgatggtgaaaacaacactgataaacagaacaat
gatgttgaaaaaagaatcaacggagttctcattaaacttgtgtcaattcatacaaagagt
ttacaaagccttgatattcgattcataccaaatactttggcaaatgatgattcaatggga
ttgagtacgtacaacactgtctcagatgaactaaacattgtgagtgttgatgaatcatta
tctgtaatttcaccttcactcgacaatggacaatctatggatgacttgatggaagttcct
caacaagaggaagaagatgaggaggaaggagattcaagcaaaaataaaactgctctcaca
gcgaatgaaggtgatcaatcaacattattagctgttgatgaaacagatatgacagagaaa
gatgaaatgcaagaaagcgccaagtctgtcgcggaacccatttctctttcaaccaatgaa
ccaatccgcacaactgtcatggatcttgttggtgatgtcacagatgagcttccagttgcc
cactcttcacccagtgggggaaggcaatatagcatgcaagaggattcgttgaacaggggg
cagggtgagggtgaagcttctgcttccccagacaaacctgacagtcatcctgtgttactg
actccagaagctttcacgtcatcactgaaaaagcctgatgatttggtgtctgttgacagt
acattcactcatgttacaccattcagtgttgatcatccttccttgttcggatcagaaata
aataaatctatgcaagaatcaacccaccaaaagtctccactcttgccaacttcatcatca
attacgcctccacccccaacatttccatctagtgtcagtgcttctggtaatgtcaagggt
atgttgttcaaatcgccagaattggaatcaccaaaaatacaatcaacaacaccgcttgta
tcgttaagcacatcacaggcttctattgaaatggggccaacatcatcataccactctatt
ttacattcgttaccaatgaatgaaccgggaccgtttggggatgtgcaaaacacaagattc
atgatgtccaaatctaaggacaaatctcctgatcttatatcttctgcatctacaattgaa
aatgtgatcgtgtcttcctcagaagctagagttctgattggtggtccacttgctggtgca
gtaggtgggagtggtgattcattatttatgacaggacatcctaaagtttctcaggatttt
gatgcagaatcgataggttcaaatacatctaagaaatcatcatcttcaatgccaccaatg
tcttctgcaccatggccaaaagcacctgacgtcacaatgtcaagaccttccatcagaaag
ccaacaaactcgagcaccactcgagatgattttctcagagcgagtgatttatctcaatca
caagttactgtgagaccggactcagtgctgcatgcggaccaacgggcagacgaccaaatt
aaaccacagtcttcttataatgctaaaatgggcgcagatttgctggcagctattgtgaat
ttgcaaaagcaacaagaagatttgatgaaatctcatcaaaaagaaattaacaagaaaaca
aatcaaatcatgaaaaatgttgatgttgctctcaagaagtttgaccaacaacaaaatgaa
aagcttgaacgagctctaaagagcatgtcagattcccagcgtaaatttcaggcagaaact
cgagcaaatatggcgtctgcgaacgaacaagctgtcggtaaaatggaaaggagtattaaa
catgaagtaaaaaatactgtgttgcctggtttgagcagaagtcttgatccgctcaaagat
caacttcacagttcttttgcgcaaaagttgactgcaactgattcagttcttaaagacagt
ttgggaaagctagtgaggtcaaaggaaactgttgaagcaattgggaattcaacaggtcga
gcaattcaatctcaagttcattccgcattccgtgattccttcacacaaatagttgttcca
atgatggagaaatcatgcaataatatgttcgtacaattgtccacagtgtttcaaaaagga
atggatgaagttgtactgaagctcgagaaacaaattcagtctcgagtaaaagttgatttg
gatcgattacagtcaactgaaaaacaagcgagagaagcaacggctgaattgagagatgta
gctggacatgctcgaacaaaaattacgacagctgtagaacaagacatgcgaacacttata
aattcggaaatgaaaagtgcacaagaaaccttaatagcagagatgtctaaatcatttcaa
cgacaaaatgaattggctctcaaagaacaaaaagctttgttgacccaatgcattcgaacg
acaatggcggaaatgcctattcaacaacatcaaattcgcacaaagttaccaggagacaag
accaaccacccgtccactcctggaagatcacctggacctcttcgaccaacctttgaaatg
caacagcaggcgattctgaatcttttacatcaaggaaatttgaattctgctttccaaaga
gcattgacagcctctgatcttgctttggtaatgtacgtatgtgaaactgttgatcctgca
atagtgtttggaactgttccatgtccacttcatcaaccaatattattgtctctaattcaa
caattatcatgtgatcttggacgcaacacgacaactaagatgaaatatcttcaagaagct
gtcatgaatttggattcatcgcatcaagttacgcaagaacatatgcaaggtgtcctggag
gcacttgtcaagaatttagaagctcatgttgctacgcttgtgtcatcaccgacggatgca
tctaatactccagtcataaaacaaatgaggatgcttgccatggcagcgaaatcactcatt
taa
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