Styela clava (leathery sea squirt): 120332502
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Entry
120332502 CDS
T07291
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
KO
K19672
intraflagellar transport protein 140
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sclv03037
]
120332502
Cilium and associated proteins [BR:
sclv03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
120332502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR19_1st
WD40_Prp19
Beta-prop_EML_2
ANAPC4_WD40
WDR55
WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
TPR_IFT80_172
TPR_COPA_B
Beta-prop_CAF1B_HIR1
TPR_GEMI5
PPR
Nucleoporin_N
EIF3I
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_EML
TPR_2
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
Beta-prop_WDR35_TULP_N
PPR_2
Pep3_Vps18
RMC1_N
WDCP
Beta-prop_LRRK2
TPR_12
GTP_EFTU_D2
Beta-prop_ELP1_2nd
Motif
Other DBs
NCBI-GeneID:
120332502
NCBI-ProteinID:
XP_039255690
LinkDB
All DBs
Position
Unknown
AA seq
1523 aa
AA seq
DB search
MALYFDRALNTPSGNVTVHSAWQKVSGHFAVCSASPGAGAGFVDIFNAEGEKKTSKEHAI
QRSCQPTICSWHPIKNILAVGWENGELVIYNGHNDETHEVPTLHTQAITSICWSTNGSRL
ASGDKVGVAAVWRADDRGRIQHNPVCRFEIGAEVTQCITPTSSSNENIMSSKIASLARAA
VSGDEKALDLFATLDTKKGSKLQMPSVADGLSFYFGAKNGEIFYIDGKGHEHQCMKMENS
VHKLMYFSAKEALVSISSDLQVVLSRVHGDGKTEELYRAKLSGQGTKSDMTWASEGLLAS
ATSDHSLRMWNLNSDDNYTLSLDTALGFDSDERITSVAYSDQKRILAASTNKCKIAMWNF
SPMFDSKTIQDAESQWLLQQATTIETEALHIEWCNRKAVLAVNHDRGVTFLTEQRLNWAI
SNRILAVQTAPKQAFVEISPEQSTQSMGVPTLSPTRSMDQWKSPTHSQKPVQTELNTEIF
FTGIAVSKDALAVWNGSQVVVYDVVNNTLILAGNFFIESIVNALHDQSFFTVESGNNKEN
NKVQVRNFKGTVKQVLQFQDKEGEVVHLDVCGNFLVAATNQGVLRIYDLSRRDAKPHCNS
KNMAELIPYFGSFKSIKCNSAGTRVAMVVKQDNQVTSPKLYIYNVEKDRVDLFDFASGKS
GDGDLMRSTEAEENRIQNALDVAGRYPLSIHWDTEEPCLLVCEAQLSDNARRTPVQAVTS
SSSIGSDTHEIPIEQLIVLLYSTTDEGVLVQDSFKKSIEQSAIIGLRVPNFYFTKAVISK
AEKELSKENGESVTFSSKPFSNVPMRDFVGLEDCDPTTRRAMLDFSFNLTLGNMDEAFKA
IKLIKSEAVWESMAKMCVKTRRVDVAKVCLGRMGHVRGAQALRLADKEPEVDARIAMLAL
QLGMNDEAERLYRKCQRFDLLNEFYQATGKWAKALEIAEQFDRVHLRTTFHNYAKHLEQS
EEIAGAIPMFEKAGTHSFEVPRMLFDDIDMLETYVLKSKNKTFLRWWAQYMESTGEMETA
LKYYDQAGDIFSLVRVYCYCGKVEKAAGIANETKNRAACYHLARHFENSDDIKQAIHFYT
CAATYGNAIRICKEHGFEDQLMNLALLSSPTDMVEAATYYETRPDLVEKAVLLYHKAGHF
SKALKLAFDTQQFGALESIAQDLDERADPVLLERCANFFMEHQQYDKAVSLLVIAKKYPE
AVDLCLQNSVKLDESLVERLTPDKDMTPSSGTREQLLIKLGDCCMKQGSYHLACKKYTQA
GDREKAMRALLKSGDTEKIIFFAGVSRSRNIYVMAANYLQSLDWRKDPEIMKHIINYYTK
GRALDSLAGFYDACAQVEIDEYQNYDKALGAMTEAFKCLSKAKMANKQQQEDKVTELKTR
IALVKKFIQAKRLFDSDSLEATKQCQVLLAENDLDSAVRIGDVYGVLIENYAHTQDYEKA
YQMMQEMQRRIPTVNMAYYVNMRTIETVHQALGVSQGRSNNTAVVGKTINSGFDSDDEDL
DKNDISEEIYDNGDSSVDMYRFR
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atggctctttattttgaccgggcattaaacacaccatctggaaatgtaactgttcattcg
gcttggcagaaagtatcaggtcattttgcagtatgttctgcatctcctggggccggtgct
ggcttcgtggatatattcaatgcagagggagaaaagaaaacatcaaaagagcacgcaatt
caaagatcgtgtcaaccaactatatgttcctggcatccaattaaaaatatacttgcagtt
ggttgggaaaatggtgaacttgtgatttataatggacacaatgatgagacgcatgaagta
cctacactgcatactcaagctatcacttcaatatgctggtcaactaatggttcaagactg
gcatctggtgacaaggttggtgtagcagctgtgtggcgagctgatgatcgtggaagaatt
caacacaatcctgtttgtaggtttgaaattggagctgaagtcactcaatgtataacacca
acatcatctagcaatgaaaacatcatgagtagcaaaattgcaagtcttgctcgtgcggct
gtaagtggtgatgagaaagcactcgacctttttgcaactttggatacgaagaaaggttca
aaactacaaatgccaagtgttgccgacggactttctttttactttggagcaaaaaatggt
gaaattttttatatcgacgggaaaggacatgaacaccaatgcatgaaaatggaaaattct
gttcataaactcatgtatttcagtgcaaaagaagcactcgtctctatttcatcagaccta
caggttgttttgagtcgagttcacggtgatggcaaaacggaagaattgtatcgagcaaaa
cttagtggtcagggaaccaaatcagacatgacttgggctagtgaaggactactcgcttct
gccacatctgaccattcattgagaatgtggaatttaaactctgatgataattatacttta
tcgttggatactgcccttggttttgactctgacgaacgtattacttctgtggcatattcc
gatcaaaaacgtattctggcagctagtaccaacaaatgtaaaatagcaatgtggaatttt
tctccaatgtttgattccaaaacaatacaggatgccgaaagtcaatggcttctacagcaa
gctacaacaattgaaacagaagcattacatattgagtggtgcaacaggaaagctgtgtta
gctgtaaaccacgacagaggagttactttcttgacagagcaaagattaaattgggcgata
tcaaatcggattcttgctgttcaaactgcaccaaaacaagcttttgttgaaataagccca
gagcaatctacacagtctatgggtgttccaacattgtctccaactcgttcaatggatcaa
tggaagagcccgacccattctcaaaaacctgttcaaaccgaacttaacactgaaatattt
tttactggtattgctgtcagcaaagatgctttggctgtttggaatgggagtcaagttgtt
gtgtatgatgttgtcaacaatacattgatactagcagggaatttttttattgaatctatt
gtcaatgctcttcacgatcaaagtttcttcactgttgaatctggtaataacaaggaaaat
aataaagtgcaagtcagaaattttaagggcacagtcaaacaagttcttcaatttcaagac
aaagaaggtgaagtcgttcatcttgatgtctgcggaaatttcttggttgctgcaacaaat
caaggagttctgagaatttatgatttgagtcgaagggatgcaaaaccacactgtaattct
aaaaacatggctgaacttattccatactttggttcgttcaaaagcatcaaatgcaatagt
gcaggaaccagggttgcaatggttgtaaagcaggataatcaagtcaccagtcctaaatta
tacatttacaatgttgagaaagatcgagttgatttgtttgattttgcatccggaaaaagt
ggagatggagatctgatgagatcaacagaggcagaagaaaacagaatacaaaatgcatta
gatgtggcaggaagatatccattgtctattcactgggacacagaagaaccatgtttgtta
gtttgtgaagcacaactctcagataatgcaagaagaacaccggtacaagctgttacgtca
agctcatcgattggaagtgatacacatgaaataccgatcgaacagttgatagtacttctg
tacagcacaacagatgaaggagttctcgtgcaagattctttcaaaaaatcgatcgagcaa
tctgctattattggtttgcgagttcccaatttttattttacaaaagctgtgataagcaaa
gcagaaaaagaactttcgaaggaaaatggtgaaagtgtaacttttagttcgaaaccattt
tctaacgtaccaatgagagattttgtcggtttggaagattgtgatccaacaacaaggcgg
gcaatgttggattttagtttcaatttgactttaggaaatatggatgaagctttcaaagct
attaaattaataaaaagtgaagcagtttgggaaagtatggctaaaatgtgtgtaaagacg
agaagagttgatgttgctaaagtttgccttggaaggatgggtcatgtcagaggagctcag
gcattaagacttgctgataaagaaccagaggttgatgcaaggattgcgatgctcgctctt
caacttggaatgaatgatgaagctgaacgtctgtacagaaaatgtcaaagattcgacttg
ctgaatgaattttatcaagcaactgggaaatgggcaaaagcgcttgaaatagcagagcaa
tttgatagagtgcatttgagaacaacatttcataattatgcaaaacatcttgaacaatct
gaggaaattgctggtgcaataccaatgtttgaaaaagcaggaactcattcatttgaagtc
ccgagaatgttatttgacgacatcgacatgctggaaacatatgttctcaaatcaaagaac
aagacttttcttcgatggtgggcccaatacatggaatcaacaggagaaatggagacagca
ctcaaatattatgatcaagctggcgatattttttctctcgttcgtgtttattgttattgc
ggcaaagtggaaaaggctgcaggaatcgctaacgagacaaagaatcgtgcagcgtgttat
catcttgctcgtcattttgaaaacagtgatgatataaaacaagcaatacatttttatact
tgtgctgcaacatatggaaatgctatcaggatttgtaaagaacatggatttgaagaccaa
ctgatgaatcttgcgttattgagttcaccaacagacatggtagaagccgcaacgtattac
gagactcgaccagacttggttgaaaaagctgttctgctctaccataaggccggacatttc
tcgaaagcgttgaaattggcatttgatacccagcaatttggagctcttgaatctatcgca
caggatttggacgaacgagctgatcctgtgttgttggaaagatgtgcaaacttcttcatg
gaacatcaacaatatgataaagctgtcagcctgcttgttattgcaaagaagtatcccgaa
gctgttgatttatgtctgcaaaacagtgtcaaactagatgaatcgttggtggaaagattg
acaccagacaaagatatgacgccgtcttcaggaactcgtgaacaacttcttatcaagctg
ggagattgctgtatgaaacaaggatcttatcatttggcttgtaagaagtatactcaagct
ggagatagagaaaaggcgatgagagctttgctaaaatctggtgatacagagaagattata
tttttcgctggagtatcaagatcaagaaacatttacgtgatggctgcaaattatcttcaa
tcgttagattggaggaaagatcctgaaattatgaaacatatcatcaattattatacaaaa
ggaagagctcttgattctttagctgggttttatgatgcttgtgctcaggttgaaattgat
gaatatcagaattacgataaagctctcggcgcgatgacagaagcattcaaatgtttatcg
aaggctaaaatggcaaacaaacaacagcaagaagacaaagttacagaattaaaaaccagg
attgctctcgtcaagaagttcatccaagctaaaaggttgtttgatagcgattcattggaa
gctacaaaacagtgtcaagttcttctggctgaaaatgatttggattctgcagtgagaatt
ggagatgtttacggagttttgattgaaaattatgctcatacccaagattatgaaaaggct
tatcaaatgatgcaagagatgcaaagacgaatcccaacagtcaacatggcgtattacgtc
aacatgagaacgattgaaacagttcatcaggctctcggtgttagtcaaggacgaagcaac
aacacagcagttgtcggaaaaactatcaattctggttttgatagcgacgatgaagatctc
gacaaaaatgatatttctgaggagatttatgataacggagattccagtgttgatatgtat
agatttagatga
DBGET
integrated database retrieval system
