Styela clava (leathery sea squirt): 120333352
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Entry
120333352 CDS
T07291
Name
(RefSeq) nuclear pore complex protein Nup54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120333352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120333352
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120333352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
PDT
Motif
Other DBs
NCBI-GeneID:
120333352
NCBI-ProteinID:
XP_039256690
LinkDB
All DBs
Position
Unknown
AA seq
540 aa
AA seq
DB search
MAFSFGNKTAGTGSLFGQSGTTSAFGAKPATTASAFTFGAGSSSVTGFGAKTTASIFGGG
NTGTSAFSGFGKTTTTASTGFSTGFTSTLGGGGLFGGNQQQQQQQQQQVQNSQDPGTTLL
LNTASALSAPIVFGDERDAILAKWNQIQAFWGTGRGFYRKDGSHVTFTPENHFCRFKAVG
YSCLPKTKDDEGLLAIVVNKKESEITSVGNDKISSVIHGILESKPNLSVKVDSVRSLPGD
RTEITVYVEEQSAATGTIKRVPASELHAFVSQRRIQQQLQQNMAAVSCMPRAAMRPEQIK
QILENPPSGIDAVIWEQAKADNPDPTSLIPVPMIGFSELQNRLMHQEMMAKQHQSRLDIL
SNKLHDLQQMQVNAQSMIEQNKRQYLQLSHRVLKVIIAQEICRKAGFAIQPDEEQLRVQL
ESIYSELSAPTQCRGRLNEMLSQMRMQHHHNTLASSLTSGQNRSDREGILDDEALSEIKL
HLKKQQEGLNTLIGLLREDFEDLKLMEHGLTDEDALVSGMGQTGMNPTVGSRGSAYRYYR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttagttttggcaataaaactgctggaactggatcattgttcgggcaaagcggc
acaacttcagcttttggggctaaacctgccacaactgcttctgcttttacattcggagca
ggatcttcttcagtcacaggttttggagccaagactaccgctagtatatttgggggagga
aatactggtacttcagcattcagtggatttggaaagacgacaacaactgcttctacagga
ttttcaacaggattcacttcaactttaggaggaggtggattatttggaggaaatcaacaa
caacaacagcagcaacaacaacaagttcaaaacagtcaggatcccggaactacacttctt
ttaaatacagcttcagcgctgtctgctcctatcgtgtttggtgatgagagagatgcgatt
ctcgctaaatggaatcagattcaagcattctggggaactggtagaggtttttatcgaaaa
gatggatcacatgtgacttttactccagagaatcatttctgtcgcttcaaggcagtggga
tatagctgtcttccaaaaacgaaagatgatgaaggactgcttgcaatcgtggtgaataaa
aaagaatccgaaattacttcagtcggaaatgataaaatatcaagcgttattcatgggata
ttagaatcaaaacccaatttgtcagtcaaagtggattccgtcagatcgctaccaggagac
agaacagagataacagtctatgtagaggagcagtcggctgccactggcacaattaaaaga
gtaccagcatcagaactccacgcattcgtcagccaacgtcgtatacaacagcaactgcaa
caaaatatggctgcagtatcatgcatgcccagagcggctatgagacctgaacagattaaa
cagattttggaaaatcctccatctggaatcgatgctgtaatatgggagcaagctaaagca
gataatccagatccaacatccttaattccagttccaatgattggattcagtgaattacag
aatcgtctcatgcatcaagaaatgatggccaaacaacatcaatcacgtttagatatatta
agcaacaaattacatgatcttcaacaaatgcaagtaaacgcacaatcaatgattgaacaa
aataaaagacaatatttacaactatcacacagagttctgaaggtgataattgcacaagag
atttgtagaaaagcaggattcgctattcaacctgatgaagaacaattaagagttcagctt
gagagtatatacagtgaattgagtgctccaacacaatgcagaggaagactaaatgaaatg
ttatcacaaatgcgaatgcaacatcatcacaatactttggcatcatctcttacttccggg
caaaatagaagcgacagagaaggcatcttagacgatgaggctttatcggagattaagctt
catttaaagaaacaacaagaaggcttgaatacacttattggactattacgagaagatttt
gaggatttgaaattaatggaacatggtcttacagatgaagatgcattggtttctggtatg
ggacaaacaggaatgaatcccactgttggtagtagaggctcagcatatagatattatcga
tga
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