Styela clava (leathery sea squirt): 120335228
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Entry
120335228 CDS
T07291
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03015
mRNA surveillance pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120335228
09123 Folding, sorting and degradation
03018 RNA degradation
120335228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120335228
03041 Spliceosome [BR:
sclv03041
]
120335228
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120335228
mRNA cycle factors
Stress granule specific factors
120335228
Spliceosome [BR:
sclv03041
]
Complex C
Other components
Complex C specific factors
120335228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_10
RRM_7
RRM_3
ApbA_C
Motif
Other DBs
NCBI-GeneID:
120335228
NCBI-ProteinID:
XP_039258636
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MNNAGPTSYPMASLYVGDLHPDATEAMLYEKFSQAGPVLSIRVCRDMVTRRSLGYAYVNF
QQPADAERALDTMNFDPIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLDKSIDNKALYDTF
SAFGNILSCKVSCDMNGSKGYGFVHFETEEAAQRAIEKVDGMLLNDKKVFVGKFISRSER
HKLIGERQKNFTNIYIKNFADALNDEKMREMFSQFGPLRSVAVMQDPEGKSLGFGFVAFE
NHDDAAKAVAETNGKEIGGQEIYVGRAQKKSERMSEIRQRYERQKQEQIQRYQGVNLYVK
NLDDSIRDDSLREAFASFGTITSAKVMTDGERSKGFGFVCFSAPDEATKAVTEMNGRIVG
SKPLYVALAQRKEDRKAHLAAQYMQRVSNSMGMRVAPPNQMIGQSFQSGAPGYFMPIHGQ
SRYMQGHQLIRATPRWQAATAQPGFQIPGSIRAPHGGGPAIRPMTAPVSARNGLQQQQQH
RIDMLQSRQQPIYMQQNRQPFKYNQSVRNPASMAGGVNQQAQVQQQVETVQPAVHVQGQE
PLTASMLASAPPHEQKQMLGERLYPLIEAQHPTLASKITGMLLEIDNSELLHMLESRDSL
KAKMEEAVAVLQAHQAKMQAASRQAQPASQPVQNQGITGVQQINQVNNAAQNAVPVGGQE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgcaggacctaccagctacccaatggcttcactttatgttggtgaccttcat
cctgacgcgacggaggctatgctttatgagaaattctctcaagctggcccagtgctgtcc
attcgcgtctgtcgggacatggtcaccagacgttcgcttggctacgcatacgtcaatttt
cagcagccggctgatgcagaacgagctttggacaccatgaactttgatcccatcaaaggt
caacccattcgcatcatgtggagtcaacgtgatccaggactgagaaaatctggtgttggc
aacattttcatcaaaaatttggacaagtctattgacaataaagctctgtatgatactttc
tctgcgtttggcaatattttgtcatgcaaagtttcgtgtgacatgaatggatccaaagga
tatggttttgtgcatttcgaaaccgaggaagctgcacagcgtgcgatagagaaagtagat
ggaatgttactgaatgacaagaaagtatttgttgggaaattcatttcacgatcagaaaga
cacaagttgattggcgagagacaaaaaaatttcactaatatctacatcaaaaattttgcc
gatgctctaaatgacgaaaagatgagggaaatgttttcacagtttggtcctctacggagt
gttgctgtgatgcaagatcctgaaggaaaatcccttggattcggatttgttgctttcgaa
aaccacgatgacgctgcaaaggctgttgctgaaacgaacggaaaagaaattggtggacaa
gagatctacgtaggtcgcgcccagaaaaaatctgaacggatgtctgaaattcgacagagg
tatgaaagacaaaagcaagagcaaattcagcgataccaaggagtcaacctgtatgtaaaa
aatcttgatgattccatcagagatgatagtttgcgtgaagcgtttgcatccttcggaacc
ataactagtgcaaaagttatgactgatggcgaacgttctaaaggatttggatttgtttgt
ttcagtgcaccagatgaagcaactaaagcagtaacagaaatgaatggtcgtattgttggg
agtaagccactctacgtagctttagctcaaagaaaagaagaccgaaaagctcatttggct
gctcaatacatgcagagagtttccaattcaatgggaatgagagttgctcctccaaaccaa
atgataggacagtcattccaatcaggtgctcctggatacttcatgccaattcatggtcag
agtcgctacatgcagggtcaccagcttattagggcaacaccaagatggcaagctgccact
gctcagccaggattccaaattcctggaagcattcgtgcaccacatggtggagggcccgct
attcgcccaatgactgccccagtttcagccaggaatggtcttcagcaacaacaacaacat
cgcattgatatgctacagagccgccaacagccaatatacatgcaacaaaatcgacaacct
ttcaaatacaatcaaagtgtccgcaaccctgcttcgatggctggtggtgtcaaccaacaa
gcccaagtccaacagcaagttgaaacagtacagcctgctgtgcatgttcaaggtcaagag
ccgcttacagcaagcatgttggcatctgctccaccccatgagcaaaagcagatgttgggt
gaacgtctttacccactcatcgaagcacaacacccgactctcgcttcaaagattactgga
atgttgttggaaattgacaattctgaattgcttcacatgttggaatctagagactctctc
aaagcaaagatggaagaggctgtggctgttcttcaggcacatcaagcaaagatgcaggca
gcaagtcgacaagcacaacctgcttctcagcctgttcaaaatcaaggcattactggtgta
caacaaatcaaccaggttaacaacgctgctcagaatgcggttcctgtaggtggtcaagag
taa
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