Styela clava (leathery sea squirt): 120336442
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Entry
120336442 CDS
T07291
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120336442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120336442
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120336442
U7-dependent histone pre-mRNA processing factors
120336442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Thioredoxin_4
Motif
Other DBs
NCBI-GeneID:
120336442
NCBI-ProteinID:
XP_039260059
LinkDB
All DBs
Position
Unknown
AA seq
817 aa
AA seq
DB search
MTSIIKFTALSGAQNEEPNCYLLQVDEFTFLLDCGWDEWFSDGIIKKIKRYLSQIDAILL
SFPDPQHLGCLPYLVGKVGLTCPIYATVPIYKMGQMFMYDLYQSHHNTEEFDKFTLDDVD
MAFDRITQLKHNQTLTLKDKGHGLSITPIHAAHIIGGTSWKIVKADEEGEIVYAVDFNHK
RERHLNGCTLLESVGSGGNGGRGGIAGSVCPPQLLITDAYNASYQQARRKLRDEELLTKI
IETMRSDGNVLIAVDTAGRVLELAILLDQLWRDTRSGLHAYSLAMLNNVTYNVVEFAKSM
MEWMSEKIINSFTDQRNSPFQFKHLKLCHNLGDLAQVPHPKCVLASTTDMESGFSRQLFI
RWCSDPRNSVIVTGRTAKGTLARTLIDDPTVSSLNLEIRKRVPIVGEELDEYEKKRSARK
AIERKTLQDESSDESDVEETKGSAVKHDLLISADSSKKSGGFFKQAKKTFPMYPYVENRI
KWDEYGEVINPDDFKTLEMTGNEDESHEVDKTQEKETKEEILEDEDTEVPTKCICEVRTL
EVKCSVTYIDFEGRSDGESMLKIIQQIKPREVILVRGTPSNTTRLAETIRRTLGGDISAP
GLAPLAPSPDAVQVFTPAVDEVVDTTKERHIYQVKLKDSLVNTLRFFKTKDAEVCWLNAK
LDFMEAAMNSMEVLSALQIKESQGEQQSIRRYSHDNYEDEELSEEKIFKMDVDQDQVDKI
VDRANADNVNITPTLTSLHPDELESHGTYFVNDVRLSDFKQILIKEGISAEFIGGVLVCN
NSVAIRRNQQGLVDMEGCLSDDYYRIRELLYAQYAIL
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgacatctataatcaagttcacagcactttctggtgctcaaaatgaagaaccaaactgc
tatcttctgcaggttgatgaatttacgtttttgctggactgtggttgggacgagtggttt
tctgatggcattataaaaaagataaaaaggtatttgagccaaattgatgctatcttactt
tcatttcctgatcctcaacatctcggctgtttgccttatcttgttggaaaagttggattg
acttgtccgatatatgcaactgttcccatctataaaatggggcaaatgttcatgtatgac
ttatatcagtctcatcacaacaccgaagaatttgataaatttacactggatgatgttgat
atggcatttgatagaatcactcaactcaaacataaccaaactttaactttgaaagataaa
ggtcacggcttatcaataacccccatacatgctgctcatattattggagggacgtcatgg
aagatagtcaaagctgatgaagaaggagaaatcgtttatgcagttgatttcaatcacaaa
agagaaagacatttgaatggttgtactcttctggaatcagttggaagtggtggcaatgga
ggtagaggcggaatagctggttcagtgtgccctcctcaacttcttattactgatgcctac
aacgcttcatatcaacaagcaagaagaaagttgagagatgaggaacttttgactaaaatt
atagagaccatgagatcagatgggaatgtgttgattgcagttgacactgcaggacgagtt
cttgaacttgcaatattattggatcagttatggcgagacacaagatcaggcctacatgct
tattcccttgctatgttaaacaatgtaacatacaatgttgtggaattcgcaaagtctatg
atggaatggatgagcgaaaaaattatcaactccttcacggatcaacgtaacagcccattc
cagtttaagcatctgaaactgtgtcataatttgggagatctggcacaagttccacatccg
aagtgtgttttggcaagcaccacggatatggaaagcggattttcacgtcaactttttatt
cgatggtgttctgatccacgcaattcagtcattgtcactgggagaacagcaaaaggaact
cttgccagaacactgattgatgatccaactgtgtcttctttaaatttagagattcgtaaa
cgtgttcctattgttggtgaagaattggatgaatacgaaaaaaaaagatcagctagaaag
gcgattgaacgaaaaacgttgcaagacgaatcaagtgatgagagtgatgttgaagaaacc
aagggatctgctgttaaacatgatttactcatatctgctgattcatctaaaaaaagtggt
ggatttttcaaacaagccaagaaaacatttccaatgtatccctatgttgagaatagaatc
aagtgggatgaatatggtgaagtaataaatcctgatgattttaaaacattagaaatgaca
ggaaatgaagacgaatcacatgaagttgataaaactcaagagaaggaaactaaggaggaa
attcttgaagacgaagataccgaagtgccaacaaaatgtatttgtgaagttcgtactttg
gaagttaaatgcagtgtcacctatattgattttgaaggacgatcagatggagaatcaatg
ttgaagataatacaacaaataaaacctagagaagtaattttagtgagaggaaccccttca
aatactaccagattagctgaaactatacggagaacactcggtggtgatatatctgctcct
ggtttagcacctttagcaccctcccctgatgctgtccaagtttttacacctgctgtagat
gaagtagtagacacaacaaaagaacgtcacatttaccaggttaaattgaaagactcactc
gtaaacacgttgagattcttcaaaactaaagatgctgaagtatgttggttgaatgcaaaa
ctcgatttcatggaagcagctatgaattctatggaagtactttcagcattgcagattaag
gaatctcaaggtgaacaacagagtattagaaggtattcacatgataattatgaagacgag
gaactttcagaagaaaaaatatttaaaatggacgttgatcaagaccaagttgacaaaata
gttgatcgtgcgaatgctgataatgtcaatataactcccaccctaacatcactacatcct
gatgagcttgaaagccatggaacatactttgtcaatgatgttcgactctcggatttcaaa
caaatattaataaaagaagggatttctgcagaatttattggaggagttcttgtctgtaac
aacagtgtagcaataagacggaatcaacaagggttagttgacatggaaggttgtctttca
gatgattattatcgaatacgggaattgttatatgctcagtatgcgatactctag
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