Styela clava (leathery sea squirt): 120336717
Help
Entry
120336717 CDS
T07291
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03022
Basal transcription factors
sclv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120336717
09124 Replication and repair
03420 Nucleotide excision repair
120336717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120336717
03036 Chromosome and associated proteins [BR:
sclv03036
]
120336717
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120336717
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120336717
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120336717
Chromosome and associated proteins [BR:
sclv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120336717
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120336717
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
AAA_11
AAA_22
SesA
PspAA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120336717
NCBI-ProteinID:
XP_039260406
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYEFIYPEQYSYMLELKKTLDAKGHGVLEMPSGTGKTVTLLSLILAYH
LENPQSVGKLIYCSRTVPELEKVVEELQRLLLYYKSTIGEAPRILGLALSSRKNLCINAD
VKKHQYGKEVDSHCHSLTASFVRQRHQQNEDIPICAYFENFDAFGKEEALPAGVYNLDDM
KAYGRRKGWCPYFLARHSIMHANVVVYSYHYLLDPKIADLVSKEMSKNSVVVFDEAHNID
NVCIESMSVNISRRTLDRCTGNLNQLQDHLSKMKESDAKKLQNEYQRLVEGLREANVART
SDVVLSNPILPDEVLQEAVPGSIRNSEHFVKFMKRFVEYLKSRLRVRHVVSETPVSFLHD
IFDKVCIAKKPLRFCSERLSSLLRTLEMPQIADFSPIVLISNFATLVSTYNKGFVLLIEP
FDDKAPTVFNPVMHFSCMDASIAIKPVFARFQSVIITSGTLSPLDMYPRILDFQPVTMAT
FTMTLARQCLCPMVVTRGNDQVAISSKFETREDIAVIRNYGNLLVEMCRIVPDGVVCFFV
SYVYMENIVAAWYEQGILENIQKSKLLFIETQDAAETSMALDKYHEACNNGRGAVLLSVA
RGKVSEGIDFTHHLGRAVIMFGIPYVYTQSRILRARLEYLRDNFQIRESDFLSFDALRHA
AQCVGRVIRGKTDYGIMVFADKRFARSDKRNKLPRWIQEHLGDNVCNLSTDECVHIAKRF
LRIMAQPFTKDDQLGLSLLTHEQLETGEMQRRIQQLAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatagatggactcctggtttactttccatatgaatttatttatcctgaa
caatattcctatatgcttgaattgaagaagacactagatgcaaaaggtcatggagtgttg
gaaatgccttctggaacaggaaaaactgttactttgttgtcattaatcctggcatatcat
ttggaaaatcctcagtctgttgggaagttgatttattgttcgcgaactgttcctgagctt
gaaaaagttgttgaagaattgcaaaggctacttctctattataagtcaactattggggag
gcaccaaggatactgggactggctttgagttccagaaagaatctttgcatcaatgctgat
gtgaaaaaacatcagtacggtaaagaagttgacagtcattgtcactccctcactgcatca
tttgtcagacaaaggcatcaacagaatgaggacattcccatttgtgcttatttcgaaaat
tttgatgcatttggtaaagaagaagctcttcctgctggtgtttataatttagatgatatg
aaagcatatggacgtaggaagggatggtgtccttatttcttagcaagacatagtatcatg
catgcaaatgttgttgtctacagttaccattacctacttgatcctaagatagctgatctt
gtatcaaaagaaatgtcaaagaattctgttgtggtttttgatgaagcacacaatatcgac
aatgtctgcatagagtcaatgagtgttaatataagcagaagaacattagacagatgcact
ggaaatctcaatcaacttcaggatcatctgagcaaaatgaaagaatcagatgcaaaaaaa
cttcaaaatgagtatcagagattggttgaaggattaagagaagcaaatgttgccagaaca
tctgatgttgttttatctaatcccatcctaccagacgaagttttacaagaagcagtacca
ggcagtataagaaactcggaacattttgttaaatttatgaaaagatttgttgaatattta
aaatcgagattacgagttcggcatgttgtcagtgaaactccggtatcatttctacacgat
attttcgacaaagtttgcatcgctaaaaaacctttgagattttgttcagaacgtctttcg
tcactgctgcgtacacttgaaatgccacaaattgcagatttttcaccgattgtcttaatt
tctaattttgccacgttagtaagcacctataacaaaggttttgttttattaattgaacct
tttgatgataaagcaccaacagtgttcaatccagtaatgcatttcagctgcatggatgcc
tccattgccatcaaacctgtgtttgcaagatttcaaagtgtgatcatcacttcgggtaca
ctttctccgctagacatgtatcccaggattcttgattttcaaccagttactatggcaacc
tttactatgacacttgctagacaatgtctatgtcctatggttgtcacgagaggcaacgac
caagttgcaataagttctaaatttgagacaagagaggacattgcagtgattcggaactat
ggaaatcttcttgttgaaatgtgtagaattgttccagatggtgttgtctgcttttttgtt
tcatatgtgtacatggagaacatagttgctgcatggtatgagcaaggaatccttgagaat
attcagaaaagtaaacttttattcattgaaactcaagatgctgctgaaactagtatggcc
ttggataagtatcatgaggcctgtaacaatggaaggggagcagttctgctgtcagttgct
agaggcaaagtttctgaaggaattgatttcactcatcacctcggacgagctgtcatcatg
tttggcattccttatgtttacactcagagtagaattttacgagcgagacttgagtatcta
cgagacaactttcaaattcgtgaatctgattttctatctttcgatgcacttcgacacgca
gcacagtgtgttggaagagtaattcgtggcaaaactgattatggaattatggtctttgcc
gataagagatttgcacgtagcgacaagagaaataagttacctcgttggatacaagaacat
ttgggagataatgtatgcaatttatcaactgatgaatgcgtccatattgccaagaggttt
ttacgaattatggctcaaccatttaccaaggatgaccaacttggattatcactgctaact
catgaacaactggaaactggtgaaatgcagagaagaattcagcaacttgcacatcaagtt
taa
DBGET
integrated database retrieval system
