Styela clava (leathery sea squirt): 120336782
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Entry
120336782 CDS
T07291
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120336782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120336782
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120336782
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Dredd_N
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
120336782
NCBI-ProteinID:
XP_039260519
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MPKTLLHFFSPKSVKKEENGTSSPKSNSGTPLKPKNTFLTPKSEGKILSKKTFLTPKSEG
KIPSKKSPFFSPMVPAKTIECNVCDIVWAKLDGYPWWPSIVCNDPTDGVHEKREGKKKFI
HVQFFDNPVTHAYVEAKNVEIYDGSQSLDFQIGGKFYSPDLDVIEATKKGDEALKKGVEG
REKLLVKFEDSFDDFADDLDDMLADACDNSVASSNNEVSMEIEEGKRPKRKAVKKAAKKR
RRIETHSDEDDCVSEEDFDPNKESESDESDEDVGEESSDLATESEPDDSPIKDSRKRKRK
GSLPAPKISNTPSNSKLAAFNPTTSTTSRTPLVCQQTKSRLSLFQASETEGSMGDDLETT
KYLHETLEFLFPENLRDKHGRKTGDPDYDSTSLKIPQEFLKKCTPAMFQWWKLKVDHFDV
IFCFKVGKFYELYHMDAVVGVNELGLIYMRGSFAHSGFPEVAFGRYSESLVQKGYKVARV
EQTETPEQNAIRIKKGMPSKQEKTLRREICRIVTKGTQSLGSWPGSGNMHSGNNFLLAVT
EKSSGGNNFQEGVNSNVCREFGICFIDTSVGLFHIGQFMDDRHCSALCTMLSHYTPCQIL
FERGHLSASLQKILRSGLSSILQEPLLPGTQFWDATKTMKFLKTEGYFEKNGEDDWPTAL
KSMMQDAEAVSFSAAKNYELAISAFGACVFYLKKCLIDYEVISMKQFVEYKPPKSGDPQY
VAQELEDAVANFAKGDNKMILDSVTLANLEILENTNGGTEGTLIERLDHCHTAFGKRLLR
QWLCAPPCNPEVSSDRLDALEDLMGCQEFVSETNEVLKKVPDLERMLMKIHSLSKDSKKP
DHPDNRAVLYEEDKYSKKKIEDFLTILQNYECVHKLLVKHQDLVKSFRSSLLQKILGLSS
ENGNFPNMSDTLKRWKTAFNHTKAVETGKITPNHGANPEYDSALDEIADIQAKLNSYLKE
QKKHIGCSSIVYKGTGNKRYQLEMPIDVADRKNLSGYTISGQRKGFKSFRTAETEEFLKE
MEAAEARRDSAQSETMAIIFREFDQDFAMWNSAVQCLSILDVLLSLTEYCKNSEIQMCRP
ILSWKGANTSPFLDISTGRHPCVTRTFFGDDFIPNDTLLGCQGDDNDVTNNPNCLVLTGP
NMGGKSTLMRQVGLIVVLAHLGCYVPAEHCRLSPVDRVFTRLGASDRIMSGESTFYVELS
ETSAILKHATKHSLVLLDELGRGTATYDGTAIALAVVREISANIKSRTIFSTHYHTVVDD
LKDNADVKQGHMACMVENEDADNEDPSKETLTFLYKLTDGPCPKSYGFHAARLADVPESV
ITLARHKAAELESNNNNVSMFRSICQGNVPEKNNITV
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaacattgcttcattttttctccccaaaatctgtcaaaaaagaagaaaatggc
acgagctcaccgaaatcaaactctgggactccattgaaaccaaaaaacacatttttaacc
ccaaaatctgaggggaaaattctatcaaagaaaacgtttctaacccccaaatctgaagga
aagattccttcaaagaaatcaccatttttttctcctatggttccagcaaaaaccattgaa
tgcaatgtttgtgatattgtttgggctaaattagatggttacccatggtggccgagcata
gtttgcaatgaccccacggacggcgttcatgaaaaaagggaaggaaaaaagaaatttatc
catgttcagttttttgacaatccagtaactcatgcctatgtagaggcaaaaaatgttgaa
atatatgacggttctcaatctcttgattttcaaattggtggaaaattctatagtccagat
ctagatgtcattgaggccacaaaaaagggggatgaggccttaaaaaaaggggtggaaggc
cgtgaaaaattgcttgttaaatttgaggacagttttgacgattttgctgatgatttagat
gacatgttagctgatgcgtgtgacaattctgttgctagtagcaacaatgaagtttccatg
gagattgaagagggaaaaagaccgaaacgaaaggcggtaaaaaaagcagctaagaaacga
cgcagaatcgaaactcactctgatgaggatgattgtgtttcagaggaagattttgatccg
aataaagaatccgagagtgatgaaagtgatgaagatgttggggaagaatcttctgattta
gctactgaatccgaacctgacgattcaccaattaaagattctcgaaaacgaaaaagaaaa
ggttcgcttcccgctccaaaaatatcaaatacacctagtaattcaaaacttgctgctttt
aatccaactaccagtaccacctctcgaactccgcttgtgtgccagcaaacaaagtcacga
ttatcattattccaagcttcagagacagaaggatctatgggagatgacttagagactaca
aagtatttacatgagacattggagtttctttttccagagaatttacgagataaacatggt
agaaagacgggcgaccctgattatgattcaacatcattaaaaattccgcaagagttttta
aaaaaatgtacgcctgctatgttccaatggtggaaattaaaagtagatcattttgatgtg
atattttgttttaaagttggcaagttttatgagttataccacatggatgccgtggtagga
gtcaatgaattggggctcatttacatgagagggtcttttgcacattctggatttccagaa
gtagcattcggtcgttattccgaatcgctcgtacaaaaaggttataaagtcgctcgtgtg
gaacagacggaaacgccggaacaaaatgcaattcgaatcaaaaagggaatgccgtcaaaa
caagagaaaacattaagaagagaaatttgtcgaattgtaacaaaaggaacgcaaagtttg
ggatcctggccaggtagtggcaatatgcatagcgggaataattttcttttagctgtcact
gaaaaatcttcaggaggaaataacttccaagaaggagttaattctaacgtgtgtcgtgaa
tttggaatctgttttatcgacacttctgttggtttgtttcacatcggtcaatttatggat
gatcgccactgctctgctttgtgtactatgctctctcactacaccccttgccagatttta
tttgaacgtggtcacctatcagcttcattacagaaaattcttcgctcaggactttcctcg
attcttcaagagccattattaccaggaactcaattttgggacgcaacaaagacgatgaaa
tttctcaaaacggagggttattttgagaaaaacggggaggatgattggcccactgctttg
aaaagtatgatgcaagacgctgaagccgtcagcttttcagcggcaaagaattatgagcta
gcgataagcgcgtttggcgcttgtgtgttttatcttaaaaaatgcttgattgattatgaa
gtcatctcaatgaaacagtttgttgagtacaagccgccgaaaagtggagatccacaatat
gttgctcaagaacttgaggatgctgttgcaaattttgcgaagggcgataataaaatgatt
cttgatagtgttactttagcaaacctggaaattttggaaaacaccaacggaggtactgaa
gggactttaattgagcgattagaccactgtcatactgctttcggtaagcgtttgctccgc
caatggctctgtgcacccccatgtaaccccgaagtttcctcggatagattggacgctctc
gaggacctaatgggatgtcaagagtttgtatcagaaaccaacgaggtcctaaagaaggtg
ccggatttggaaagaatgttgatgaaaattcattctctttcgaaagattcgaaaaaacct
gaccaccctgacaatagggctgttctttacgaggaagacaaatatagtaaaaagaaaatc
gaagattttttaacaattttacaaaattatgaatgtgttcataaattactagtgaagcac
caagatttagtgaaaagtttcagatcctctttgctacaaaaaatattgggtttgtccagc
gaaaatggaaattttccgaatatgtctgacactttaaagcgctggaaaacagcttttaat
cacacaaaggctgttgaaacaggtaaaataacaccgaatcatggtgccaatccagaatat
gactcagcattagatgaaattgctgatatacaagcgaaactgaatagctatttgaaagaa
caaaaaaaacatattgggtgctcgagcatcgtttataaaggaactggaaataaacgttac
caattggaaatgccaatagacgtggcggaccgaaaaaatttatccggttatacaatatca
ggtcaaaggaaaggttttaagagttttcgaactgctgaaacggaagagtttttgaaagaa
atggaagccgctgaagcgcgacgagattctgcacaaagtgaaaccatggcgattatattt
cgtgaattcgatcaggattttgcgatgtggaacagcgctgttcagtgtttatctatatta
gacgtattgctcagtctaacggagtattgcaaaaatagtgaaattcaaatgtgtcggccc
atactgtcttggaaaggtgccaatacctctccatttttggatatttcaacaggaaggcat
ccatgcgtgactcgtacattttttggcgatgatttcatccctaacgatactcttctcggt
tgccaaggtgatgataatgatgtcacaaacaatccaaattgtttggtcctcactggccct
aatatgggaggaaaatctactctaatgagacaagtgggactcatagtcgtgctggcacat
ttagggtgctatgttcctgctgaacactgtaggctatcaccagtcgaccgtgtctttaca
aggctaggggcatcagaccgtatcatgtctggcgaaagcacattttacgtcgaattgagt
gaaacttcagcgattttgaaacacgcaaccaaacattctctcgtgcttttggatgagttg
ggccgtggcacagcgacttacgatggtactgcgatagctttagccgttgttcgagagatt
tctgctaatataaaaagcaggacaattttttcaactcattatcacaccgttgttgacgat
ttaaaagacaacgcagatgtgaaacaaggccacatggcttgcatggtagaaaatgaagat
gctgacaacgaagacccgtctaaagaaactttaacttttctgtataaattgaccgatgga
ccatgtccgaaaagttatggcttccatgcagcacgattggccgatgttccagaatctgtg
atcactctagcgcgacacaaagcagcagagcttgaaagtaacaataataatgtgtcaatg
ttcagatcaatatgccaaggcaatgtccctgaaaagaacaatattaccgtttaa
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