Styela clava (leathery sea squirt): 120337380
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Entry
120337380 CDS
T07291
Name
(RefSeq) SR-related and CTD-associated factor 4-like
KO
K13191
RNA-binding protein 16
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120337380
03041 Spliceosome [BR:
sclv03041
]
120337380
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120337380
Spliceosome [BR:
sclv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120337380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
DUF1687
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
120337380
NCBI-ProteinID:
XP_039261073
LinkDB
All DBs
Position
Unknown
AA seq
1429 aa
AA seq
DB search
MDAVKSFNDELSSIYETKPPVSRAKMTILTKKAIKGIKFYKHIVQSMEKFIQKCRPEYKV
PGLYVIDSVVRQSRHQFGQEKDVFMPRLCKNILVTFKHLYKCPQEEKQRIIRVLNLWQKN
NVFPPEIVQQLLVMGGAPVPDGPASSQPPAPLSLPQLADVSSIAIGESTDTGSLTNMLAQ
LLANPDNPQIQQLTGMLSNSQQAQLQALVNQVKGQQDDTKGEAPQPVSSSHTEPPTMTQR
PPQPSHQASVFEPRQDNRQPPFLHSQAQESNVPSRPSFNRAILDYDYSDDESPKSQEQNK
HRPGIDMDLLAKLPTVDQLHQITGEQVPNGNDSFPRQHQEDRLPRQHEDDDRRRRLEQEQ
EVFNKQIQQLSSEFGEGERSSQDDRSSRSTSRRQRSKSPKKRSRSRDHHRHRRRSRSRSR
DRSRRSRRSRSRDRHRSHHRRSSDRDRRSADRDREHRDRGLPPIRDGFISLCSKTLWIGN
LSSKVSQQELRTEVENHGKIESINMIPPRGCAYICMEKREEAAAALQKLRHIKIHGKSLK
VDWAPGKEVKEEFKEFWSKEYGVNYIPLSRVVDHLVALRHQGFIDIDSVPEEKRVELSQA
AENEVKESEVAPTAAMATGVPMAPMPGVSMVPGGMVPVPGTQGGMVTGPGGMPIMMRPAF
PFPGMGQFAPQQRMPGFQIAPGGMAPRPTMRLPTQATAVEAPSPQKHEVPTSGSRTPTMD
ERQADGAQKAAAVAASIMSTVQPQLQAQQISMAQPRFHGPVQIRMMPGVHPHSPQVMQQR
IGMNVMPIRMGMPMQFRPGFARVPMMPHPFQPQPGMQMQRMGQMMPSMPQGAMHLQGPMG
LGPPFPGQQQPPERPPLEDDGVIVEEEVVLEDPDKDEKLGDKTIELNGGKRPPQPAIEVR
LPPVDHRRPSVEDRIRMDERPPIEIHDRPPGFRMDERPPPGYRMDDRGPPGFRRSPPGRF
GFDGRHPPVDGPLGGPRYPDRERFPDRDGRDDRRRDDMRRRDRSRSRERDRRDRGGMRDR
RFERDDRDRFRDGGGRGRDRMGGRGRFAGRDDFGRGGRGGFGGFGHRDQFEEEVDEEDME
YKKKRDEVLRQRREQEDEYVVEEIDFSAFGLPTGFGPPPSAEPEPEKEDRGDRRRDKDRD
DDRHRRDDRDRREDRSRRDDRDRRDRDRRKDDRDRRERRRSRDRDRDEGSREKRSDEDRT
RKSTDEPTESKRRKLEDETEQTPTPAEKDGHAPLAPSGDQSPSKISASEDRLPADKRGEA
PELTGESDAAHEQNDDLQAHDDSHEKNDQSQPAHGESDLSHEPTGQFTEAHEPLDEFGAS
NEQKVVQDSHEPNYDHQIHDETSHENEQFHENEKEEKHDELDHHESNDNSQENNSKYAHE
QVTDEQDELHCKITNPDHTEGVEEQKMSKTPLSGIQDDTPQPEEVAMEE
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgtgaaatccttcaatgatgagctttcaagcatctacgagacaaaaccccca
gtgtctcgagcaaagatgacaatcctgactaagaaagcaataaaaggaatcaagttctac
aaacacatcgtacaaagtatggagaaattcatacaaaagtgtcgaccggaatacaaagtt
cccggactctatgtgatagactcggtcgttcggcaatcaagacatcagtttggtcaggag
aaagacgtcttcatgccgagactgtgcaaaaatattctcgtcaccttcaaacatttgtat
aaatgtccacaagaggagaagcaacggattatcagagtcctgaacctctggcagaagaac
aatgtttttcctcctgagatcgtccagcagttgttggtcatgggtggggcccccgtaccc
gatgggccggcttcatctcagccccctgccccgttatcattgccccaacttgcagacgta
tcctccattgcaatcggagagtcaacagacacaggttccctcacaaacatgctggctcaa
ctcctggcgaatcctgacaatccacagattcaacaactgacaggaatgctctcaaactca
cagcaggctcaactacaagccctggtcaatcaagtcaaaggacagcaggatgatacgaaa
ggggaagcccctcaaccagtctcatcctcccatactgaacccccaacaatgacacagcgg
ccccctcaaccctcacatcaagcatctgtgtttgaacctcgccaggacaacaggcagcca
ccatttctacattcacaggcccaggaaagcaacgttccatctcggccttcatttaaccga
gccattctggattatgactacagcgacgatgagtctccgaaatcacaagaacagaacaaa
cataggcctgggatagatatggatctacttgccaagttgcccactgtggatcagctccat
caaataacaggagaacaggttcctaatggcaacgattcgtttccaagacaacaccaggaa
gacaggttaccacggcaacacgaggatgacgacaggagacgtagattggagcaggaacag
gaagttttcaataaacagatacaacagttatcttcagaatttggggaaggtgaaaggtca
tctcaagatgacagaagttcaaggtcaaccagtagaagacaaaggtcaaagtcacctaag
aagagatcaaggtcccgcgatcatcaccggcacagaagacgaagccgttccaggtctcga
gacagaagtagaaggtcccgacggtcacgctctcgggatcgtcacagatcacatcacagg
agatcatcagaccgtgacagaagatcggcagaccgtgaccgagagcatagagacagagga
ttgccgccaatacgggatggattcataagcctttgttcaaaaactctttggattgggaat
ttgtcgtcaaaggtttcacagcaggaactcagaacagaagttgaaaaccatgggaagatt
gaatccataaatatgataccacctcgaggatgcgcgtatatatgtatggagaaacgggag
gaggccgcagcagccctgcagaagctgagacacattaagatacatggaaagtctttgaaa
gttgattgggctcctggtaaagaagtgaaagaagaattcaaggaattttggtcaaaggag
tacggcgtgaattatatcccgttatctagagttgtggatcacttggtggcgctaagacat
caaggatttattgacattgattccgttccggaagaaaaaagagtcgagctttcccaagct
gctgaaaatgaggtaaaggaatcagaagttgctccaactgctgctatggcaacaggtgta
ccaatggcaccaatgcctggcgtttcaatggtgcctggtggcatggtcccggtgccaggg
acacaaggcggcatggtgacgggacctggtggtatgccaataatgatgagaccagcgttt
ccgttccctggaatgggacagtttgccccacagcagaggatgccaggattccagattgca
ccgggaggcatggcaccacgtcctacaatgaggcttcccactcaagccacggctgttgag
gcaccgagccctcagaaacatgaagtgcccactagtggcagtagaacaccaacgatggac
gagaggcaagctgacggagctcagaaagcagcagcagtagcagccagcatcatgtctaca
gtccaacctcagctacaggcccagcaaatatcaatggcccaacctcgcttccatggaccg
gtgcagattcgtatgatgccgggcgttcacccccactccccccaagtaatgcaacaacga
attggaatgaatgtcatgccaataaggatgggaatgccgatgcagttcagacctgggttt
gcaagggttcctatgatgccacatccattccaacctcagccggggatgcaaatgcaaagg
atggggcagatgatgccatctatgcctcaaggtgcaatgcatctacaaggccccatgggt
ttagggccaccgtttccagggcaacagcaacccccggaacggcccccactggaggacgac
ggagtgattgttgaggaagaagtcgtgctggaggatccagataaagatgagaagcttgga
gataaaaccattgaactgaatggtgggaagagacctccccaacccgcaatagaagttagg
ctccctccagtggaccatcgacgtccttcggtcgaagacagaattcgtatggatgagcga
ccaccaatagagatacacgaccgtcccccagggttccgcatggatgaacgccctccacct
ggatacagaatggatgatcggggccctccaggttttcgcagatcccccccggggaggttt
ggatttgatggacgtcaccctccagtggatggaccactcggcggaccaagatatcctgac
agagaaagattcccagaccgagatgggagagatgacagacgcagagatgatatgagacgc
cgagacagatcgaggagtcgggagagagatcggcgagacagaggagggatgagggacaga
agattcgagagagatgatagagacaggttcagagatggaggtggccgggggagagatagg
atggggggccgtggaagatttgcaggtcgggatgattttggtcgagggggtcgtgggggg
ttcggaggtttcggacatcgagatcaatttgaagaagaagttgatgaagaggatatggaa
tataagaaaaaaagagacgaggttcttcgtcaacgccgtgaacaggaggatgaatatgtt
gtagaggaaatagatttttctgcgtttggacttccaacaggcttcgggccgccaccatcg
gccgaacctgaaccggagaaagaagacaggggagacaggaggagggacaaagatcgtgat
gatgaccgccatcgccgtgacgatcgtgatcggcgtgaggacaggagtcgtcgtgacgac
agagaccggcgggacagagatagaagaaaagatgatcgggatcgtcgtgaaagacgcaga
agtagagacagagatcgagatgagggcagtagagagaaacgatcagacgaagatcgaacg
agaaaatcaacggatgaaccgactgaaagtaaacgcagaaaacttgaagatgaaacggaa
caaaccccgacacctgccgagaaagatgggcatgctcctttagctccatctggtgaccag
tccccatcaaaaatctccgcttcggaagatcgtttacccgcggataagcgcggggaagcc
cctgagctcactggtgaatctgatgcagctcatgagcaaaatgatgatttacaagctcat
gatgattctcatgagaaaaacgaccaatcgcaacctgctcatggtgaaagtgatttatct
catgagcccacaggacagttcacagaagctcatgagcctttagatgaatttggtgcaagt
aatgagcaaaaagttgttcaggattcccatgagccaaattatgatcatcaaattcacgat
gaaacatcccatgagaatgaacaatttcacgaaaatgagaaggaggaaaaacatgatgaa
cttgaccatcatgaatccaatgacaattctcaggaaaataacagtaaatatgctcatgag
caagtcacagatgagcaggatgagctgcattgcaaaatcacgaatccagatcatacagag
ggggtagaagaacaaaaaatgagtaagacaccacttagtggaatacaagatgatactcct
caaccagaagaagtcgctatggaggagtaa
DBGET
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