Styela clava (leathery sea squirt): 120338737
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Entry
120338737 CDS
T07291
Name
(RefSeq) slit homolog 2 protein-like isoform X1
KO
K06839
slit 2
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120338737
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sclv00536
]
120338737
Glycosaminoglycan binding proteins [BR:
sclv00536
]
Heparan sulfate / Heparin
Axon guidance molecules
120338737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
EGF
LRR_5
Laminin_G_2
LRRCT
Laminin_G_1
LRRNT
LRR_9
EGF_TEN
hEGF
JAG1-like_EGF2
EGF_DL_JAG
cEGF
LRR_EndoS
EGF_Teneurin
EGF_3
EGF_C8A_B_C6
LRR_LRWD1
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
120338737
NCBI-ProteinID:
XP_039262600
LinkDB
All DBs
Position
Unknown
AA seq
1619 aa
AA seq
DB search
MKDLVLPLTLLAVVGLGIACPSKCSCTEDTMQCIERGLTSVPTGIPRSIEKIELQGNNIS
HITRSDFAGLRKLRILYLDENQIVSIEKNSFGENNLLEILRLNNNELTILPENLFSKLRA
LQRLDLSHNRIGIIQKKTFRGPNSLRTLQLSNNEISCLHESSLRPVRSVEFLTLDNNKLT
TLPLQSFEHLMKLRTFRFNNNPLNCDCHLAWISEWLISRPSAGLFTQCAEPSHLQGMEIK
HLERGEFVCDASTGRQKPKCEMSSYCPSMCKCSNGIVDCRDKGLKSLPVSMPADVTEIRL
EQNMIEVIPARAFARYRKLKRIDLSNNLISEVSEDSFQGLKHLNSLIMYENKITSLPKGI
FAGLGNLQLLLLNANKLSCLRHDTFDGLVSLKLLSLYDNKLQIISKGTFRSLKSIQTLHL
AQNPFICDCNLRWLADYLQDNPVETSGARCAAPRRLGNKKIAHVKSRRFKCEEGDNFPPP
FAGECSPEAECPDKCRCDGSVIDCSRQQLTGVPDNIPPYATELNLAFNDIEILASLDIFK
KLTNLKKIDLSNNKLMIIEEGAFNGAYSVLELWINDNELSDMNGGMFAGLRNLRTLMARN
NRLKCISNATFAGLSSMTHLSLYGNQITSIVEGAFDSLTSLNLLDLQHKRNLLSNPLICN
CHMSWLSVWLRTGTFSSGNPRCAEPSFLHGFPVADINPQDFHCSTEEKSQPPSCKPEIKC
PERCLCEGTVVRCINVGLTAVPVDDIPETVTELYLNLNKIRLIPTSIKRFTKLEKLDLSN
NLIATLQDNIFANFTRLSTLLLAYNKLRCLPPRGFSGLKNLRILSLHSNEISTVQHGTFD
DLIALSHAGFGSNPWYCDCNLAWFNEWINKDYLEPGIAQCSGPSAVAGRVLLTTPIASFV
CNDLPLSKCKRRKSRRRGPLSIPIASKCDPCLSTPCLHDGTCRLHPVEYYQCICPSGFKG
KHCEMPVNACNLHPCRNGATCTGRDEISYTCTCPPGFSGYDCEINIDDCKMRPCRPDNAT
CIDGINTYTCKCPPGWSGDFCHIEIEDPCSENPCMNEGQCFPSLASDGQVEFRCECKIGF
RGLNCSEEWDPCLDHKCENEAQCVMDGSNGAGYRCECSRGYRGQYCEFIDGHTALIQQDD
PCIGNDCENGAQCYVEPGRASDFTCRCLPGYTGNKCQMLTGVSFLRNGSYAELHKAVEDQ
EYLQITVEIATKELNGVILYAGESSQHITIELFAGHVRFSYDGINSAIYSEEIINDEEFH
VIRLDIRTASVTMVIDDSRNYEAVSKKIVSTALPLYVGGIPANVLSNARRSWHIRNTTSF
VGCLRNLNIDGEPVDFFTASQAGFSDLFQQDTGVRPGCSRDGLVSTCSDLTCKFGECVAN
ENGGSQCSCMEGYSGIYCDIEDSEPTACSGNRCQHGMCVVNGENASSYVCECDAGYGGEF
CEIRDFCAGVDCGDHGTCVPHSSGHTCKCRMGYSGRNCASRIRRCSGTKTRQFVQITVAR
SSSDESPTTSSDMTSSSSDTMLCKSNKRITNLVCDSSSCTRISRRTARRRARGSESGHFR
ATTLRGLGAILNEEPPAPTCCAPLRQKRKNIELLCEDGTRITQQVTKVQSCGCQTCGQE
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccttgtgctaccgctgacgctgttggctgtcgtcggtctcggaatagcatgc
ccatcaaaatgctcatgcacagaagacacgatgcaatgtatagaacggggactgacttca
gtaccaaccgggattccacgatcaattgaaaaaatagagcttcaaggaaacaatatctcg
cacataacaaggtcggattttgcaggattgaggaaacttcgaattttgtaccttgatgag
aatcaaatagtcagcatcgagaaaaattcatttggggaaaacaatcttcttgaaatacta
cgactgaacaataacgaactgacgattctgccagaaaatcttttcagcaagttgagagcg
ctccagagactagatctctctcacaacagaatcggaatcattcagaagaaaacgttcaga
ggaccgaactcactcagaacattgcaactaagcaacaacgagatatcgtgtctacacgaa
agtagtctcagaccagtccgcagtgtggagttcctgactttagacaacaacaaactaaca
acactcccgctacaaagttttgaacatttgatgaaattgaggacatttcgtttcaacaac
aaccctttgaattgcgattgtcatcttgcgtggatatcagaatggctgatctcaagacca
agtgctggtttatttactcagtgtgcggaaccttcacatttacagggaatggaaataaaa
catctggaaagaggcgaattcgtctgtgatgcatcaacaggcagacaaaaaccgaaatgt
gaaatgtcatcttactgtccatccatgtgcaaatgttctaacggaattgttgattgccga
gacaaaggtttgaaatcgctcccagtctcaatgcctgctgatgtcacagaaatacgtctt
gaacaaaacatgattgaagtgattcctgctcgagcgttcgccagatacagaaaattgaaa
agaattgatctcagcaacaacctgatttcagaagtatcggaagattcgtttcagggattg
aaacatctcaattctttgatcatgtatgaaaacaagatcacaagccttccgaaggggatc
tttgccggactaggaaatcttcaacttctgcttttgaacgctaacaagttaagctgtctt
cgccatgatacattcgacggacttgtgtcactgaaattactgtcactctacgacaacaaa
ttgcaaattatttcgaaaggaactttcagatcgctgaaatcaattcagaccttgcatctg
gctcagaatccttttatttgtgattgcaatttacgttggcttgctgactatttgcaagac
aatccagttgaaacaagtggggcaagatgtgctgccccgagacgactaggaaacaagaaa
attgcacatgtaaaaagcagacgatttaaatgcgaagaaggagacaactttccgccaccg
tttgcaggagaatgcagccctgaagcagaatgtcctgataaatgcagatgtgatgggtca
gtcatcgactgctcaagacaacaactcaccggagttcctgacaatattcctccttatgcg
acggaattgaatttagctttcaacgatatcgaaattcttgcaagtttggatattttcaaa
aaactaacaaatttgaagaaaatcgatctttctaacaacaagctgatgataattgaggaa
ggtgctttcaacggagcttatagtgttctagaactgtggataaatgacaacgaactctcg
gatatgaatggcgggatgtttgcgggactgagaaatctcagaaccttgatggctcgcaac
aatcgacttaaatgcataagcaacgctacttttgctggtctatcaagcatgacgcatctt
tccttatatggaaaccagatcaccagcatcgtcgaaggagctttcgattccctcacatcc
ctaaatctcctggatttgcaacataaaagaaacttactctccaatccacttatctgcaac
tgccatatgtcatggctatcagtctggcttagaactggaaccttttcatctggcaaccct
cgttgtgccgaaccttctttcttgcatggcttcccagtagcagatatcaatcctcaggac
ttccattgctcgactgaagagaaatctcagcctccttcatgcaaaccagaaataaaatgt
cctgaaagatgcttatgtgaaggtaccgtcgtccgatgtatcaatgtaggactgactgca
gttccagttgacgatattcctgagacagttaccgagctttacttaaatctcaataaaatt
agactcatcccaacttcaatcaaacgattcacaaaacttgaaaaacttgacctgagcaac
aacctgattgcaactctccaagacaacatctttgcaaacttcactcgtttgtcaactcta
cttcttgcttacaataaactgagatgtcttccaccgagaggattttctggtctaaagaat
ctaagaattttgagtctccatagcaacgaaatatcaaccgtacagcatggaactttcgac
gacttgatcgcactctctcacgctggcttcggatcgaacccttggtattgcgattgtaac
ctcgcctggttcaatgaatggatcaataaggattacctggaacctggcatcgctcaatgt
tccggaccttcagctgtggccgggagggttttattgacaactccaatcgcaagcttcgtc
tgcaacgaccttcctttgagcaagtgcaaacgtcgaaaatctcggcgacgaggacccctc
agcattccgattgcatcaaagtgtgacccatgcctttcaactccatgccttcatgacgga
acttgtcgcttacatcccgtcgagtattatcaatgtatctgtccgtcaggtttcaaaggc
aaacattgtgaaatgcctgtgaacgcttgcaacttacacccatgcagaaacggagcaaca
tgcactggaagagatgaaatttcttacacatgtacctgcccaccaggattctcaggctac
gattgtgaaatcaacatagatgactgtaaaatgcgcccatgtagaccggataatgcgact
tgtattgatggaataaatacttacacctgcaaatgcccgccgggatggtctggagatttc
tgtcacatagaaatagaagatccatgctcggaaaatccttgcatgaatgagggacaatgc
ttccctagccttgcatcagatggtcaagtagaattcaggtgtgaatgcaaaatcggtttt
agaggattaaactgttccgaagaatgggatccttgtcttgatcataaatgtgaaaacgaa
gcacaatgcgttatggatggatcgaatggtgccggatatagatgcgaatgttcacgcgga
tatcgtggtcaatactgcgaattcattgatggccataccgcgttgatccagcaagacgat
ccctgcatcggcaatgattgcgaaaacggagctcaatgttacgttgaacctggtcgggct
tcggacttcacctgtcgctgcttgcctggatataccgggaataaatgtcaaatgttgact
ggtgtgagtttcctccgcaatggaagttatgctgagcttcataaagctgttgaagatcaa
gaatatctgcaaattactgtagaaatcgctaccaaggagctaaacggagtcatcttgtac
gccggagaatcgagtcaacatatcacgattgaattattcgctggccatgtacgattcagt
tatgatggaatcaattcagcaatttatagcgaagaaatcataaacgacgaagaattccac
gtgattcgacttgacatccgtacagccagtgttacaatggtgatagatgactctcgcaac
tacgaagccgtcagtaagaagatcgtcagcacagcactgcccttgtacgtcggaggaatt
cctgccaatgtgttgtccaatgctcgcagaagttggcatataagaaacactactagtttt
gttggttgcctccgtaacctcaacattgatggtgaaccagttgatttcttcactgctagt
caggcagggtttagcgatctcttccaacaggacactggcgttcgtcccggatgttccaga
gatggcttggtgtcgacatgtagcgatttgacctgcaaattcggtgaatgtgtcgccaat
gaaaatggaggatctcaatgcagttgtatggaaggatattcaggcatatactgcgatatt
gaagactcagaaccaacagcttgttcaggaaatcgatgccaacatggaatgtgtgtggta
aacggggaaaatgccagttcatatgtctgcgaatgtgatgcaggttacggcggagaattc
tgtgaaatcagagacttttgcgcaggtgttgattgtggcgaccatggaacatgtgtccct
cattcatctggacacacttgcaaatgtaggatgggatacagcggaaggaattgcgcaagc
cgtattcgaagatgcagtggaacaaagaccagacaatttgtccagattacagtcgcaaga
tcttcttcagatgaatcaccgactacgtcatcagatatgacgtcatcatcatccgacaca
atgttgtgcaagagcaacaaacgaatcacaaatcttgtgtgcgattcatcatcatgcaca
cgtattagtcgacgcactgcaagaagacgcgcgagaggatcagaaagtggtcactttcgt
gcgacaacgttgcgtggtttaggagcaattctcaatgaagagcctccagccccaacctgt
tgcgctcccctgcgacagaagcgaaaaaatatagaacttttatgtgaagatggcacccgt
attacgcagcaggtcacaaaagttcaaagctgtggttgtcaaacttgtggacaagaataa
DBGET
integrated database retrieval system
