KEGG   Styela clava (leathery sea squirt): 120339099
Entry
120339099         CDS       T07291                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
sclv  Styela clava (leathery sea squirt)
Pathway
sclv03250  Viral life cycle - HIV-1
sclv03272  Virion - Hepatitis viruses
sclv04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:sclv00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120339099
   03272 Virion - Hepatitis viruses
    120339099
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120339099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sclv04131]
    120339099
   03400 DNA repair and recombination proteins [BR:sclv03400]
    120339099
Membrane trafficking [BR:sclv04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    120339099
DNA repair and recombination proteins [BR:sclv03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    120339099
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_22 AAA_14 AAA_5 RuvB_N AAA_25 IstB_IS21 DUF815 AAA_18 AAA_2 PhoH YCII NPHP3_N nSTAND3 AAA_24 AAA_33 RNA_helicase AAA_17 TPR_1 Mg_chelatase AAA_28 AAA_7 TPR_16 ABC_tran Parvo_NS1 HAT_Syf1_CNRKL1_C Sigma54_activat TPR_12 TPR_2 bpMoxR Torsin
Other DBs
NCBI-GeneID: 120339099
NCBI-ProteinID: XP_039263100
LinkDB
Position
Unknown
AA seq 433 aa
MPGTLEKAIELVNKATLEDKAGNFEEALRLYESAVEYFLHVLKYEAANDKAKQSVRSKCS
QYLERAEKLKKYLAAKDQASTNKKPEKAQGGNNSDDDDDIEKKKFRNQLGGAIVVEKPDI
KWSDVAGLQQAKESLKEAVIMPIKFPHLFKGKRTPWRGILLFGPPGTGKSYLAKAVATEA
NNSTFLSVSSSDLVSKWLGESEKLVKALFQLARENKPSIIFIDEVDSLCGSRSENESEAA
RRIKTEFLVQMQGVGVDNSDVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEAPARLTMFK
LHLGDTLTTLTDKDFKYLAEQTKGYSGADISIVVREALLNPIRKIQQATHFKRIRGPSQD
DANIIVDDLLVPCSPGENGAIEMSWSDVPGDKMCEPKVCMQDMLSAIANVRPTVSEDDMK
QLREFTQSFGVEG
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgccgggaacattggaaaaagcgatagaacttgttaacaaagcaacacttgaagataag
gcaggaaactttgaagaagcattaagactttatgagtcagctgtagaatattttttgcat
gttctcaagtatgaggcagcaaatgataaagcaaaacaaagtgtgcggtcaaagtgttca
cagtatttggagcgagcagaaaagttgaaaaaatatctagctgcgaaagaccaggcttct
acgaataagaaaccagaaaaggcacagggtggaaacaattctgatgatgacgatgacatt
gaaaaaaagaaattccgaaaccaactaggtggagcaattgtagtagaaaagccagatatc
aaatggtctgatgtagctggattacaacaagctaaggaatcactcaaggaggctgttata
atgccgattaaattcccccaccttttcaagggcaagcgtacaccatggagaggtatatta
ttgtttggtcctcctggtactggtaaatcatatcttgcaaaggctgtagctactgaagct
aataattctacatttttatcagtgtcttcttctgatcttgtatcaaaatggctgggagaa
agtgaaaagttggtaaaggcattgtttcaattggcacgagaaaacaaaccttcgattata
ttcatagatgaagttgattcattatgtggttcccgaagcgaaaatgaaagtgaggcagct
cggaggatcaagacagagtttcttgtgcaaatgcaaggcgttggagtggataactctgat
gttcttgttcttggtgcgactaacatcccctggactttggactctgctattcgccgtcga
tttgaaaaaagaatctacatccctttaccagaagcacctgcccgccttaccatgttcaaa
ctccatttgggggatactctaaccacattaactgataaagatttcaagtatttagcggaa
caaacaaaaggttattctggtgcagatatcagtattgttgtacgagaagcccttctgaat
ccgataaggaaaatccagcaagcaactcacttcaaaagaataagaggcccatcgcaggat
gatgccaatattattgtagatgatcttctggttccatgctcacctggagagaatggagcg
atagaaatgtcatggagtgatgtaccgggagacaagatgtgtgaacccaaagtatgcatg
caagatatgttatctgctatcgctaatgtgagacccaccgtaagtgaggatgacatgaaa
caactacgagagtttacgcaatcttttggcgtagaaggttga

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