Styela clava (leathery sea squirt): 120340650
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Entry
120340650 CDS
T07291
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120340650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120340650
03009 Ribosome biogenesis [BR:
sclv03009
]
120340650
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120340650
Spliceosome [BR:
sclv03041
]
Complex A
U2 snRNP components
U2 related factors
120340650
Complex B
120340650
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120340650
Ribosome biogenesis [BR:
sclv03009
]
Eukaryotic type
90S particles
Helicases
120340650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
ABC_tran
AAA_19
ResIII
Flavi_DEAD
SRP54
AAA_7
TsaE
T2SSE
AAA_16
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
120340650
NCBI-ProteinID:
XP_039264901
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MSKRHRLDIGDDHKKKRRSEHDRDRDRDYDRKSDNHTSIPIPKPALPLNPLTQLPYTQRY
YDILKKRLGLPVWEYKEKFMKLLENHQTLVLVGETGSGKTTQIPQWCAEYVRTACAVSTR
KGVACTQPRRVAAMSVAQRVSEEMDVMIGQEVGYSIRFEDCSSQRTILKYMTDGMLLREA
MADPLMERYNVILLDEAHERTLATDILLGVIKEVTKQRPDLKIVVMSATLDAGKFQHYFD
NAPLLSIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHLCEEEEGDILMFLTGQEEIDEA
CRRIKNEIDNLGSEVGDVKVIPLYSTLPPQQQQRIFESAPPKKPNGAIGRKIVVSTNIAE
TSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSAISKASAQQRAGRAGRTRPGKCFRLY
TEKAYKTEMHENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY
LAALNDDGDLTELGSIMAEFPLDPQLAKMLVASCDYNCSNEILSITAMLSVPQCFVRPSE
AKKAADEAKMRFAHIDGDHLTLLNVYHAYKQNQTNNQWCYDNFINHRSMASADNVRQQLA
RIMDRFALPRRSTDFASRDYYINIRKALVSGFFMQVAHLERTGHYLTVKDNQVVQLHPST
CLDHKPEWVLYNEFVLTTKNYIRTNSDIKADWLIKIAPQYYHMDNFPQCEAKRQLERLIA
KQAARERVSAE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggcacaggttagatatcggcgatgatcacaagaaaaaaaggcggtcagag
cacgacagggatcgagacagagattacgatcgtaaatctgataaccacacttctatcccg
atcccaaagcctgcattgccactcaaccctctcactcaacttccatatacacaaagatat
tatgacattttgaagaagcggctcggtttaccagtgtgggaatacaaagaaaaattcatg
aaattgctagaaaatcatcaaacacttgttttggttggggaaacaggttctggaaaaact
actcaaattcctcaatggtgtgcagagtatgttagaacagcatgtgcggtgtctacacga
aagggtgttgcttgtacacaaccgcgtcgtgtggcagctatgagcgttgctcagcgtgtg
tctgaagaaatggatgtcatgattggccaagaggtaggatattctattcgttttgaagac
tgctcatctcaacgcactattttgaagtacatgactgatggtatgttgctcagggaagca
atggccgatccattgatggagcgttacaatgttattttgctagatgaggctcacgaacgt
acattagccactgatattctcctgggtgttataaaagaagtcacaaagcaacgtccggac
ctgaaaatcgttgttatgagtgccactcttgatgcgggcaaatttcaacattattttgac
aatgcaccattgttgagcatcccaggtcgtacacatcctgttgagattttttacacacct
gagccagaacgtgattatttagaagctgctattcgaaccgttatccagattcatctttgc
gaagaagaggaaggcgacatccttatgtttcttactggccaagaagaaattgatgaagca
tgtcgacgaataaaaaatgaaatcgacaatcttgggtcagaagttggagatgtcaaagtg
ataccactatattccacccttcccccgcaacaacagcagcgtatttttgaaagtgctcct
cccaaaaaaccaaatggagctattggaagaaaaatcgtcgtatcgactaatattgcagaa
acatctttgacaatcgatggaattgtctttgtcatagatcctggattttccaagcaaaaa
gtttacaatcctcgtattagagttgaatcgcttctggtgtctgctataagtaaagccagt
gcacaacagagagcaggacgtgctggtcgaacaagacctggaaaatgttttcgtctttac
actgaaaaggcttataaaacagaaatgcatgaaaatacatatcctgaaattttacgttcc
aatcttggctctgttgttttacagctcaaaaagttgggaatcgatgatttagtacatttt
gattttatggatcctcctgctccagaaaccctcatgcgagcattggaactactcaactac
ttagctgcactcaatgatgatggtgatcttactgaacttggatcaatcatggctgagttt
cctctcgatcctcaacttgcaaaaatgcttgttgctagttgtgactataactgctccaat
gaaattctcagcattactgccatgttgtctgtcccacaatgctttgtccgaccaagcgaa
gcaaaaaaagctgctgatgaagcgaaaatgagatttgctcatattgatggagaccatttg
actctacttaatgtttatcatgcatacaagcaaaaccaaaccaataatcagtggtgttat
gacaacttcattaatcatcgatcgatggcatcagctgacaatgtgcgacaacaattagca
cgaattatggatcgattcgcactacctcgtagaagtactgactttgctagtcgtgactat
tacatcaatattagaaaagcacttgtttcaggattttttatgcaagttgctcatctagaa
agaacaggtcactatttaacagttaaagataatcaagttgtccagctacatccttcaaca
tgccttgatcacaagcccgaatgggttctatataatgagtttgtattaacgacaaagaat
tacattcgcaccaattctgatattaaagctgattggttaatcaagattgcaccacaatat
tatcacatggacaactttccccaatgtgaagcgaaacgtcagttagaaagacttatagcg
aaacaagctgctagggaacgtgtatctgctgaatga
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integrated database retrieval system
