Styela clava (leathery sea squirt): 120340671
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Entry
120340671 CDS
T07291
Name
(RefSeq) roundabout homolog 2-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120340671
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sclv04515
]
120340671
Cell adhesion molecules [BR:
sclv04515
]
Immunoglobulin superfamily
ROBO family
120340671
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
Ig_VEGFR-1-like_5th
C2-set_2
VEGFR1-3_N_Ig-like
Ig_5
Ig_PDGFR_d4
FN3_DSCAM-DSCAML_C
Big_2
Fn3_ROS1
fn3_4
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
120340671
NCBI-ProteinID:
XP_039264922
LinkDB
All DBs
Position
Unknown
AA seq
1621 aa
AA seq
DB search
MCFRRKTNVTMQFVFLSALLIFGFVFEVGAEPEAAPGPSPIADPGRKSQDRSVKPVLTEE
PTSQIAKRGGTADLYCRAEGLPKPQISWYKDGHLLRKNAKNILFMHNKIHLFNLRNSVAE
GVYQCEAKNGAGTVRSQNVTLSISYIKEEFRVIPTDEVSTVGQNAIIKCEGPEGLPEPKI
TWKKDDKWLPTGTGRVRIENGDLVITGTRKSDDGQYKCVATNQAGTRESLVVLLTVLQPP
QFTVTPEDVEVKEGQDVELACQVEKPEGETKPRIRWTKADGIVSGSRFELLGNGNLRITD
IQAEDEGKYICNAGNQRTSKSVSATVTVHTKPEFIRVPKETMSVRVGATVKLTCSASGKP
KPSILWHINDGANIFADSVSEDGSVTVNEAGELTLYNAKFTDTGRYTCQALSISGRVSAD
TQLTVVSHQSDINPPIIRRGPQNITAAYGSPVDLRCTTSAIATTKFDWMKGGSKIEPGSK
YTITSGNLKIISAQNSDTGKYTCRATNDFGWSKWDVWVTVAEKGVTVSPSKFDATKVPEA
PSAPTVTGSTTDSISLQWTQDTATGSTPLIGYMIEYYCQQCDVATWNRISAKITSSTFTV
KDLTSGSSYVFLVRAVNQYGISDPSDVSEIIDTRGENPTTADEKEMSELRRKLLQISVRL
TTVNPLSVSTSSGGIRLEWDSSANCDIIDGFKIYLQPVSVRNGARIVETASCYARNTEIK
NLQSRVVYEIRIRPFKLEVMGYLSPIMLASPESEGTTPEAPILEIDSKASEGDNAAVISF
SWTPPSSILPEYISRYTLRCYDKNKDYDFIRDVSDTSYTLDDLPKGRDYIATITFSTLLG
EGRTSEKKEFSLEAGSAAEEDGLSSLMKNPAVLAGIGACVLLIIGIMVGVILYRRHKKNQ
KSRGLHVRSFSFTPQSGGRPGIPMDPFRDTQYSKGFTINFANPGGSNNNFDSDGSNTGNG
NMYLQRQNMPGPHSVARNTTVSLNNSNGNVGTSLSPDMSDVRPVARQTSSFSYVTDQLTS
MSSIPPQFSSPNSNRAPTQIMSTADLQLQLQQQQQYKRQISDSQTVLADEYSPQENLIDM
NTPLEQNPNSAYFTRDSDLPPPPPSPPMSLKTSLSERTNRSRGSSKHSDRGSNHSGSRGR
RSRERNRTFQPLERVPTDTDTGIDSPQQTPSPPRPADLRGNHSQMSSTAPQPRNQGAFSY
PSSKQHNNNNGRRRNDGIAVEYSRMTDPNLGYLGGPSEGETESEVGGIRHARANNYHLSL
PEEVRNSVAVSSVSMMNAYDSESDCGSSDGIRSRTSSVESLNMESASQVGMYGQQHAMSP
NRPGQSAFVPINNQYNGGGNALPSTRPNFVKPKVPKKNHNNAQNQYNVGGMNGHQSIYPD
PPQQGYINPKNPNLAPEQFLNRVNSASSSESSSYHQNTADSGMSAGVGSYGHNSLNSTSS
GESGPKGHISRSRTTGSLSADQPPTENNAPPHFASVDRRYLPNSDHDRPEYQNPRGRQPA
PQPRRPPRVDSFNKMSSKSPQRKDSQDSNLSLPPRDTMAYVDYETPDNDGQTVLTDNVYR
TNDDDVMNEQSDESRIAFLAAKSVFAPSNGSKPVRGRHPELSDVPEVSTSDFCEDYSDRS
Q
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgtgttttagaagaaaaacgaacgtaacaatgcagtttgttttcctgtcggcattactt
atttttggatttgtttttgaagtaggggcagaacccgaagcagcacctggccccagtcca
atcgccgatccaggacggaaatctcaagatagatccgtcaaacctgttttgaccgaagag
cccactagtcaaattgccaaacgtggtggtactgctgatctatactgccgagctgaaggc
cttcctaagccgcaaatatcttggtacaaggatggtcacttacttcgaaagaacgctaaa
aacatcttattcatgcataacaagatacatttattcaacctccgcaatagcgtggcagaa
ggagtttaccaatgtgaggcaaagaatggtgccggaacagtaagaagtcagaacgtgact
ttgtctatatcatatataaaagaagaatttcgagtgataccaacagacgaagtatcaaca
gttggccaaaacgctattattaaatgcgagggaccagaaggtctacccgaaccgaaaatc
acgtggaaaaaggatgacaaatggctgcctactggcaccggcagagtcagaatcgaaaac
ggggacctcgtcataaccgggacaaggaaatcagacgacggccaatacaaatgtgtcgca
acgaatcaagcaggaactagagagagccttgtcgtactattaacagttttacaacctcca
caatttactgtgacacccgaagacgttgaggtcaaggaaggacaagacgtggaacttgct
tgtcaggtagaaaaacctgaaggcgaaactaaaccaagaattagatggaccaaagctgat
ggaattgtatcaggatcaaggtttgaactactcggcaatggaaatctccgaatcaccgac
attcaagctgaggatgaaggaaagtatatttgcaacgctggaaatcaacgtacttcaaaa
tccgtctcggccacggttacagtccacacaaaaccggaattcattcgtgttccaaaagaa
actatgtcggtgcgtgtaggtgccaccgtcaagctgacatgctctgcctccggaaaacca
aaaccttcaatactgtggcatataaatgacggtgcgaatatatttgctgacagcgttagt
gaagatggctctgttactgtgaatgaagctggcgagctgactctttacaatgcaaaattt
accgatactggacggtatacatgccaagctctcagtatatcaggacgagtctcagctgat
acccaacttactgtagtttctcaccaaagtgacattaacccgccgattattcgccgaggt
ccccagaatataactgctgcatatggatctccagtggatctacgttgcacaacgtcagcc
attgcaactacaaaattcgattggatgaaaggagggtcaaaaattgaacccggaagtaaa
tatacaataacttccgggaacttgaaaattatcagcgcacagaattctgataccggaaaa
tatacatgtagagctacaaatgacttcggctggagcaagtgggacgtatgggtaaccgtt
gcagaaaaaggtgttacagtgtcaccgtcgaaatttgacgccacaaaagtgccagaagca
ccaagtgctccgactgttaccggatcgacaactgattctatttcacttcaatggacgcaa
gatactgcaaccggatcgactcctctcatcggatatatgattgaatattattgtcaacaa
tgtgatgtagcaacctggaatcggattagtgcaaagattacttccagcacatttacagtc
aaagatttaacttctggttccagttatgttttcctggtgagggccgtcaaccaatatgga
atcagcgacccgagtgacgtctcagagataatcgacactcgaggtgaaaatcctacaaca
gctgacgaaaaagaaatgagcgagttacggcgaaaacttcttcaaatctcagtccgtttg
acgacagtcaatcctctctctgtatcgacatctagcggcgggatacgtttggaatgggat
tcatctgcaaattgtgacatcatagacggatttaaaatttatctacaaccggtatcggtc
agaaatggtgctcgaatcgtagaaacagcatcatgctatgccagaaataccgaaattaag
aatctacaatcaagagttgtttacgaaatacggatccgtccgtttaaacttgaggtcatg
ggttatttgagtccgattatgcttgcatcaccagaatcagaaggcacaacgcccgaagca
ccaatcttagagatcgactctaaagcgtcagaaggggacaatgcagcagtcatttcattc
agttggacgccaccttccagtattttgccggaatatatatcacgttatactttgcgatgc
tatgacaaaaacaaggattatgattttattcgtgacgtcagcgatacgtcatacaccttg
gatgacctaccaaaaggaagagactatattgccaccattactttttccactttactagga
gaaggcagaacaagtgaaaagaaggaattttctctggaagctggttcagccgcagaggaa
gacgggttatcatctctaatgaaaaatcccgctgtattagctggaattggcgcatgtgta
ctccttattataggaattatggtgggtgtaatactgtatcgaagacacaagaaaaaccaa
aaaagtcggggactccatgtgcgatccttcagctttactccacaatcaggcgggagacct
ggcataccaatggacccattccgcgatacacaatacagcaaagggtttaccatcaacttt
gcaaatcccggcggaagcaacaataattttgactctgacggaagtaataccggaaacgga
aatatgtatcttcaacgtcaaaatatgccagggccgcactctgttgctcgtaatacaaca
gtgtcgctaaataatagtaatggaaatgtcgggacttctttgtcgccagacatgagtgat
gttcgtcctgtcgcccgacaaactagctctttttcttacgtcactgatcagctgactagt
atgtcaagtataccacctcaattctcttcaccgaattctaatagagcaccaacgcaaatt
atgagtactgccgatcttcagttacaattgcaacaacagcaacaatacaagcgacaaata
tcggacagccagacagtcttggcagacgaatacagtccacaagaaaacttgatcgatatg
aacaccccattggaacaaaacccgaattcggcttatttcacacgcgacagcgatctaccc
ccacctcctccgagcccaccgatgtcattgaaaacctctctgagtgaaagaacaaatcga
agtcgtggtagcagcaagcatagtgacagaggttcaaatcattctggaagcagaggtcgc
cgatctagagaacgaaatcgcacttttcagcctctggagagagtcccgactgacactgac
acaggaattgacagcccccagcagactccatcgcccccaagaccagccgatcttcgcggc
aatcactctcaaatgagtagcacggcaccacaaccacgcaatcaaggcgcattttcatac
ccgagctctaaacaacacaataataataatggaagacgaagaaacgatggtattgcagtg
gagtacagcagaatgacggatccaaatctaggatacctgggtggaccatcagaaggagaa
accgagtctgaagtcggaggaattcgccatgcaagagcgaataactatcatttgtcactt
ccagaagaagtcagaaatagcgttgccgtctcttctgtttccatgatgaacgcctatgat
tctgagtctgattgtggttcatctgacggaataagaagtcgtacatcgtcagtggaatct
ctcaatatggaatcagcttctcaagttggaatgtatgggcaacagcatgctatgtcaccc
aatcggcctggccagagtgcttttgtcccgataaataatcaatataatggcggtgggaat
gcgttaccctcaacacgcccaaattttgtcaaaccgaaagtaccgaaaaaaaatcacaac
aatgcacaaaaccaatacaacgtcggaggtatgaatggacatcaatcaatatacccagat
ccaccacaacaggggtatattaaccctaagaaccccaatctagccccagaacaattttta
aacagagttaacagcgcaagcagttctgaatcgtcatcttatcatcaaaacactgcggat
agcggaatgagcgctggcgtcggttcctatggacataatagtctaaatagcaccagcagt
ggcgaaagtggaccaaaaggacatatttctagaagcaggaccactggaagtctatccgcg
gaccagccaccgacggaaaataacgctccgcctcattttgcaagtgtggataggagatat
ttacctaattctgatcatgatagaccagaatatcagaatccaagagggagacagcccgca
ccacaaccaagaagaccacccagagtggattcttttaataaaatgtcttcaaaaagccct
caaagaaaagattcacaagattcaaatttatctctaccaccgcgggacacaatggcgtac
gttgattatgaaacgcccgacaacgacggacaaacagtattgacagacaatgtctatcga
acaaatgatgatgacgtaatgaatgaacaatcggacgagagtcgcatcgcttttcttgcc
gccaaatctgtattcgccccttctaatggaagtaagccagtccgtggacgacatccagaa
ctttcagatgtaccggaagtatcgacttccgatttttgtgaagattacagcgaccgaagt
caatga
DBGET
integrated database retrieval system
