Styela clava (leathery sea squirt): 120340831
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Entry
120340831 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120340831
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
120340831
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_12
TPR_16
TPR_17
TPR_6
TPR_11
TPR_10
TPR_9
TPR_7
ANAPC3
SNAP
Motif
Other DBs
NCBI-GeneID:
120340831
NCBI-ProteinID:
XP_039265141
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MSVEIPLRDTDEVIELDLAQLPEGEEVLGILKQENTTLNIWITLALEYYKQTKVEEFVKI
LESARTNANLEYHNHEKDQMTCLDTLAAYYVQQARKEKNKDKRTDLFMQATQLYTMADKI
IMYDQNHLLGRACFCLLEGDKMDQADAQFNFVMNQSPDNIPSLLGKACISFNKKDYKGAL
AYYKKALRTNPNCPADVRLGMGHCFYKLNKLDKARQAFQRAVDLDPVCVGGLVGLAILDL
NNKDVDSIRAGIQRLSRAYQIDASSPMVLNHLANHFFFKKDYEKVQHLALHAFHNTENEA
VQAESCYQLARSFHVQEDYDQAFQYYYQATQFATPNFVMPYYGLGQMYIFKGEEQDKERA
AECFEKVLKAYPNNYETMKILGSLYAQSDSPEKQGLACKHLKKITDQYPDDVEAWIELAQ
ILEQSDIQGALAAYGTATSILKDTVQADIPPEILNNVAALHFRLGNLKEAKKYYEAAMER
AMAEADHDEVYYHSITVTMQYNLGRLCEEMYHFETAVEHYKNILRHHPNYTDCYLRLGCL
ARDRGQIYEASEWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKNEKTQND
AYSMLALGNVWLQTLHNPTRDKEKEKRHQDRALAMFKQVLRNDPKNIFAANGIGSVLAHK
GYIREARDIFSQVREATAEVADVWLNLAHIYVEQRQYISAVQMYENCLKKFYKHHDPEVL
TYLARAYFKCNKLTDCKKVLMKARHVAPNDMVVLYNVSVVMQQLAMNVLRDEKSNLKTVL
RAVTELELAQNYFTFLSKHGDRMKLDLKQSEKEASKCRDLLSQAQYHVSRARRQAEEEKA
LREEQERERASLREKQLEEERSRIKAQEEKMRALMEXRAQIKEKSKSVAQTLELDSEPKR
KKKSKSGNKATDHFINDGSSDDAGIMHVEGTAEPLTKKRKKKLKTKGERGSKPAGSGDSD
SDNDRGKKTSKKQAKSKPAPVDKLSMKQKMKVKSRAYISDTSSSSGEEGPPANDAPGASG
GKKLLQSSSEEEGSPAAYPIAASGSDSEAAAHNQSDDSSENRASEDNQHESEQEAASGAD
SSD
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttgaaatcccacttcgtgacactgatgaggtcattgaacttgacttggctcaa
ttgccagagggtgaagaggttttgggaattttaaaacaagaaaacacaactctgaatata
tggataacattggcccttgaatactacaaacaaaccaaagtagaagaatttgtaaagatt
ttagaatccgctcgtacaaatgcgaatctcgaatatcacaatcatgaaaaagaccagatg
acttgcctcgacaccctggctgcatattatgttcaacaagctcgtaaagaaaagaacaaa
gataaaagaactgacctttttatgcaagccacacagctgtataccatggctgacaagatt
attatgtacgatcagaaccatttgctgggtcgtgcttgcttttgcttgcttgaaggtgac
aaaatggaccaagctgacgctcagtttaattttgtaatgaaccaatcgccagataatatt
ccttctcttcttggcaaagcttgtatttcttttaataaaaaggattacaaaggtgccttg
gcatattacaaaaaggccttgaggacaaatccaaactgcccagctgatgtgagactagga
atgggacattgcttttacaaactcaataaacttgacaaagcaagacaagcttttcaacga
gcagtagatttagacccggtatgtgtcggaggtcttgttgggcttgctatacttgatctt
aataacaaggacgtggattcgatccgtgccgggattcagagactttctcgtgcctatcaa
atcgacgctagtagcccaatggtgcttaaccaccttgcaaaccattttttcttcaaaaaa
gattacgaaaaagttcagcatcttgcgttgcatgcatttcataatactgaaaatgaggct
gttcaagcagaaagctgttatcagttggcaagaagttttcacgtacaagaagattatgac
caagcttttcagtattattaccaagcaacacagtttgcaactccgaattttgtcatgcct
tattatggtttaggacaaatgtatattttcaaaggagaagaacaagataaggaaagagct
gctgaatgtttcgaaaaggtgctgaaagcttacccaaacaactacgagacaatgaaaata
ttaggatcattgtacgctcaatctgacagcccagaaaagcagggattagcttgtaagcat
ttaaagaaaatcacagaccaatatcctgatgatgttgaggcttggatcgagcttgctcag
atattagaacagtctgacatacagggagctctagctgcttatggaactgcaacttctata
ctcaaggacaccgtacaagctgatatcccacctgagattttgaacaatgtcgccgctctt
cattttcgtctcgggaatttaaaagaagcgaaaaagtactatgaagctgcgatggagcgt
gcaatggcggaagcagatcatgatgaggtttattaccattccataacagttacaatgcag
tacaatctagggcgtttgtgcgaggaaatgtaccatttcgaaactgctgtcgaacattat
aaaaatattttacgacatcatccgaattacactgattgctatctgaggcttggttgtctt
gctcgagaccgagggcagatttatgaggcgtccgagtggttcaaagaagctttacaaata
aaccaggaccatccagatgcttggtcactgattgggaatttacatcttgctaaacaagag
tggggacctggacagaaaaagttcgaaagaattttgaaaaatgagaaaacacaaaacgat
gcttattctatgcttgctctcggtaatgtctggcttcaaacccttcataacccaaccaga
gacaaagagaaagaaaaacgccaccaggaccgcgctctcgccatgtttaaacaagtttta
agaaatgatccgaaaaatatcttcgctgcgaacggaattggatctgtccttgcacataaa
ggttatattcgtgaggctcgggatattttttcacaagttcgtgaagcaactgctgaagtc
gcggatgtctggcttaatttggctcatatttatgttgagcaaaggcaatatataagtgcc
gtacagatgtatgaaaattgtctcaagaagttctacaaacaccacgaccctgaggtacta
acttatcttgctagagcttatttcaaatgcaacaagttgactgattgtaaaaaggtactg
atgaaagcgaggcacgtagctccaaacgacatggttgtgctttataatgtttcggtcgtg
atgcaacagttggcaatgaacgttttgagagatgaaaaaagtaatttgaagactgtgcta
cgtgctgtgactgaactagaattggcacaaaattattttacgtttttgagcaaacatggt
gatagaatgaagctcgatctcaaacaatctgagaaagaagcaagtaagtgtcgagatttg
ctgtctcaagctcagtatcacgtttctcgtgcgagaaggcaagctgaggaggagaaagca
ttgcgtgaagaacaggagagagagcgcgcttcgctgagagagaaacaacttgaagaggaa
cggtcgcgcatcaaagcacaggaagaaaaaatgagagcgttaatggaanaaagagcgcaa
attaaagaaaaaagcaaatcagttgcacagaccttggaattggattcggaacccaaacgt
aaaaagaaatcaaaaagcggaaacaaagcgactgaccacttcattaacgacggaagtagt
gatgatgctggaatcatgcacgttgaaggtacggccgagccactcaccaaaaaacgtaaa
aagaaactaaaaacaaaaggggagcggggatccaaaccagcagggagtggggacagtgat
tcagacaatgacagaggaaagaagacttctaaaaagcaagccaaatcaaagccagctcct
gtggataaattatccatgaaacaaaagatgaaggtcaagtcaagggcatatatttcagac
acatcttcaagcagtggcgaagagggcccaccggcaaacgatgcaccaggtgcaagtggt
ggcaaaaagctgttacaatcatctagtgaagaagagggatcacctgcagcctaccctatt
gcagcgagtgggtcagacagcgaagcagcggcacataaccagtctgatgactcatcggaa
aacagagcttccgaggacaatcaacacgagtctgagcaagaagcagcgtctggcgctgac
tccagtgattaa
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