Styela clava (leathery sea squirt): 120340894
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Entry
120340894 CDS
T07291
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120340894
09123 Folding, sorting and degradation
03018 RNA degradation
120340894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120340894
03041 Spliceosome [BR:
sclv03041
]
120340894
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120340894
mRNA degradation factors
5'-3' decay
Lsm complex
120340894
Spliceosome [BR:
sclv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120340894
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF6352
Motif
Other DBs
NCBI-GeneID:
120340894
NCBI-ProteinID:
XP_039265217
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MAMALEPLVNHVVSVITGDGRMIVGTLKGFDQTVNIILDESHERVFSSSQGVEQVMLGLY
IIRGDNVALVGEIDDATDSSLDLANIKAAPLNAVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcgcttgagcctcttgtgaatcatgttgtgtctgtgatcactggcgatgga
agaatgatagttggaactttgaagggatttgatcagacggtcaacattattcttgatgag
agtcatgaaagagtgttttcatcatcacaaggtgtcgaacaagtcatgcttggactatac
attattcgaggagacaatgttgctctcgtcggagaaatagacgatgctacagactcctca
ctggacctggcaaacataaaagctgcacctttgaatgctgttgttcattga
DBGET
integrated database retrieval system
