Styela clava (leathery sea squirt): 120340985
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Entry
120340985 CDS
T07291
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03022
Basal transcription factors
sclv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120340985
09124 Replication and repair
03420 Nucleotide excision repair
120340985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120340985
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120340985
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120340985
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120340985
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120340985
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
Motif
Other DBs
NCBI-GeneID:
120340985
NCBI-ProteinID:
XP_039265332
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MGKTKKAKKNKVDKVKEDRDPDYFDEEYDDFDDGVGNEDIAAVPNAAKKHIDSESSTTVG
IEDKFGAKDYRSQMRMKTDHASRPIYVAPDGHIFLESFSPVYKHARDFLIAISEPISRPK
YIHEFRLTPYSLYAAVSVGLETDDIIEYLSRLSKTTIPTGIVDFIKLCTVSYGKVKLVLK
HNRYFVESTHAEVIQKLLKDSVIETCRKRDSGDPEVSTFVGKQGLQVNKPAVKNGESSNN
NNNEVSDAAEEGGVPKDIYDLYDKIDGNDDDETETLQVVSFEINQDDIETLQKRCIELEY
PLLAEYDFRNDTVNPDLKMDLKPTTVLRPYQEKSLRKMFGNGRARAGVIVLPCGAGKTLV
GVTAACTVRKRCMVLCTSGVAVEQWRSQFKMWSTADDSMICRFTSDAKDKPHGCGIIIST
YSMMGHSFKRSWEAERVMEWIRSQEWGLMVLDEVHTIPAKQFRRVLTVVQAHCKLGLTAT
LVREDDKISDLNFLIGPKLYEANWMELQSGGYIARVQCAEVWCPMTPEFYREYLGLQSRK
RILLYVMNPNKFRACQYLVKFHERRNDKIVVFSDNVFALKEYAVRMGKPYIYGPTSQGER
IQILQNFIHNPKVNTIFISKVGDNSIDLPAANVLIQVSSHGGSRRQEAQRLGRILRAKKG
SLAEEYNAFFYSLVSQDTKEVAYSTKRQSFLVNQGYAFKVITKLQGLDEDKQLAFGTKEE
QHNLLQKVLAASDLDAEEEMMPGEGMSSSRQGGVKRKTTMSSLSGADDAVFLEYKSKRDK
KHDLFKKFRG
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaacgaaaaaagctaagaagaacaaggtagataaggttaaagaagatcgtgat
ccagattacttcgatgaggaatacgacgattttgacgacggcgtgggaaacgaggatatt
gcggctgtccctaatgcagccaaaaagcacattgattccgagtcttccaccacagttggc
attgaagacaaatttggtgctaaggattatagaagccaaatgagaatgaaaactgaccat
gcatctcgacctatttatgttgcccctgatggacatatatttttggagtcattttctcca
gtttataaacatgctagagattttcttattgcaatttcagagccgatcagcagaccaaaa
tacattcatgagttccgtttaacaccgtattctttgtatgcagcagtaagtgttggatta
gagactgacgatatcattgaatacctcagcagattaagtaaaacaacaattccaacgggc
attgttgattttataaaactttgcacagtcagctatggcaaggttaaacttgtgctcaaa
cacaatcggtactttgttgaaagtacgcatgctgaagttatacaaaaattactaaaagat
tcggttattgaaacttgccgaaaaagggattctggcgatccagaagtttctacttttgtt
ggaaaacagggattacaagtcaataaaccagcggtgaaaaatggcgaatcttccaataat
aataataatgaagtttcagacgccgctgaagaaggtggtgtaccgaaagacatttatgat
ttatatgataaaattgatggaaatgacgatgatgaaacagaaacattgcaagttgtgtca
tttgaaattaatcaagatgatattgaaacattgcaaaaaagatgcattgaattagaatat
cccttattagcggaatacgattttcgaaatgacactgtgaacccagatttaaaaatggat
ttaaaaccaacaacagtcctgagaccttatcaagaaaaaagtctcagaaaaatgtttggc
aatggaagagcacgtgcgggtgtaattgttcttccatgcggtgctggaaagactttagtt
ggtgtcactgcagcttgtactgttcggaaacgttgcatggttttgtgtacttctggagtt
gcagttgagcaatggagatcgcaatttaaaatgtggtctactgccgatgattctatgata
tgcagatttacgtctgatgcaaaagataaaccccatggatgtggtattattattagtaca
tattcgatgatgggacatagttttaaacgatcctgggaggctgaacgagtaatggaatgg
ataaggagtcaagaatggggtttgatggtattagatgaagtccacacaattcctgcgaaa
cagttccgaagagttttaacagttgtacaagcacattgcaaactcggactcactgcaaca
ttagtaagagaagatgacaaaatttcagatttgaatttcctcattggaccaaaactatac
gaggcaaattggatggagcttcaaagtgggggatatattgccagagtgcaatgtgcggaa
gtgtggtgccccatgactccagaattttatcgagaatatttggggttacaatcaagaaag
cgtattttgctctatgttatgaatccaaacaagttcagagcttgtcaatatttggttaaa
tttcatgagcgacgtaacgataaaattgtggtattttctgataatgtatttgctttaaaa
gaatacgctgtacgaatgggaaagccatatatttatggaccaacgtcacaaggagaaaga
atacagatattacaaaacttcatacacaatccaaaagtgaacactatttttatttccaaa
gttggtgataactcgattgatcttcctgctgcaaatgtattgatacaagtttcatcacat
ggtggttctcgtaggcaagaagcacaaagattgggaagaatcctccgagctaaaaaaggc
agcttagctgaagaatacaatgcttttttctattcactcgtgtcacaagatacaaaagaa
gtggcttattcgacaaaaagacaaagttttttagttaatcaaggctatgcatttaaagtt
atcactaaactacaaggcttagatgaagataaacaacttgcatttggcacgaaagaagaa
cagcacaatcttcttcaaaaagttttagcggccagcgaccttgatgctgaggaagagatg
atgcccggtgaaggtatgtcttcatcacgacaaggtggagtgaaacgtaaaacgacaatg
tcatcgctttctggggcagatgatgcggtgtttctggaatataaatcgaaaagggacaag
aaacatgacctttttaagaaattccgtggttga
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integrated database retrieval system
