Styela clava (leathery sea squirt): 120341270
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Entry
120341270 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: gem-associated protein 5-like
KO
K13133
gem associated protein 5
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120341270
03041 Spliceosome [BR:
sclv03041
]
120341270
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120341270
mRNA cycle factors
P-body specific factors
120341270
Spliceosome [BR:
sclv03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
120341270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_GEMI5
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_EML_2
WD40
DSE1_N
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_NOL10_N
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
WDR55
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_Aladin
PAC11
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_WDR75_2nd
ASA1
Motif
Other DBs
NCBI-GeneID:
120341270
NCBI-ProteinID:
XP_039265688
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
MVVLPSSPVWYQSRGIDTSHNGILAFGSRNLVFLLDLTQKRAEIYGILSGHTDKVTTCSF
CPAIGQDQLLRISSGADDCSVKVWDVRQKLMLHEHSAHGSNKIISVHWSPVNPSLILSGD
EKGFVVCWNLDKGSTDRFYPDGSSQMHLGCLTCSPQNENIVAIGYKSGAVSLMDIRRNGT
VIKKLRGHTNEVHSIVWSPFQDENLVFSSKGQKDEEEIAVNGYKTQDDNGKILKSKKYYL
PGYEGVIATGSKDKTIKLWSISEGKCRRTLKIPNTVKKGRKTNEDVARLYSAIHWPQNSK
TKFISSGYNGDLVVWDISPAAENLFEVLASQTHDAGHHRIVFNIAHGSNLSNSIVTTSMD
RQLLHWTIPSESASASRGPDWVLPTLGGFVYSISVSPKDPSDAVGVGDGMIRVWKTXSPK
SAYDITTLWQGIKEKVMALAWHPNKEGCLAFATEDGKVGIYDTLSLRPPVVAETYHMKPV
YALSWGQNAPPISTATNKNKNLHLFSCGGDGKILQHNPSNMSKDAVDIDQIISSSNSSHS
PGKHSEVSWNQDESLLAIGNDNGTINIYLSPHLDHILEIKSHSKIVNCVKWRPNDEETNN
KFLEIVTGSNNSIIHVHDLKKIFLENEYTLGNELENPILVSKPHRSLVGHLSRITGLSYN
PRNTSQIVSSSYDSTAQVWDTETEKPLHNFRGHHGRLMCVIWSSVIDEQNPEKSSGIIYT
GADDYTVHGWYADDQQHTEPVKALPDFGFGPKNKFQNKKKGRNKKTHQNSTQPTTSLQQN
TDTTVNGIGTESRDEASIDLNYLLEKKKAELLATINCDLPVQKNENVSVETKTSPTGKMS
PGSKSSPATSRIKLVSTQRSDGAMMKKSGTQPDDDLFGRRKRRLKNMFPQSVTMDNRKKS
EQHQDCIKIVQWNTKDQSDSKDSLLFLPGSSDNINLGFYTDRKAAFRMMKNEADKLQGDE
ITEGNYNLRIWMGDIVGTIEDAKEKMQLTDQLVAMAPIAGQAFWRKTAHAFAKQLIAEDH
HLHAVHYLLVCDKVQEAIQVLLDSRHYREAVALAKARLCDEDPLLKETVRIWGQKLKSGG
SVELAAKCFAAIGDFKEASASLAQRATSGASTITDSDVSSLWAAASVAKTANEEVVASGY
ANRALQTVCLRTWNWLENNEFLSAFHNLKAYRFISVVHEILVSRLIRKAGLRELPTTRRS
NWNGPDFYHKDYSLPSAFHNILFLAWGKHAEESGDSNASILNDFNSETIIQIHNEAMQYQ
QDNPTESRISLQVAVSLAAAICTSPTMLRKHVVDSDSISENIWIKHAVHTAVLLSKSQTI
NTKILIEILSILCEIISWIKPLHFEVANGEAECSKSILNGAADLNINVEMMVASDENIFD
QMSLPYSEIIKHGVHFLSTPVTDISGDLSKFLKRLLTEYQTGFVS
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggttgttcttccatcgtcaccagtgtggtatcagtctcgaggtatagatacctcacat
aatggaattcttgcatttggatcgagaaatttggtatttttattggatttgacacaaaag
agagctgaaatttatggtatactaagtggccataccgacaaagttacaacatgttctttc
tgtcctgctattggtcaagatcaattactccgaatttcatctggagctgatgattgttcc
gtaaaagtatgggatgttcgacaaaaattaatgcttcatgaacattctgctcatggaagc
aataaaatcatatcagtgcattggtctccagtaaatccatctttgatactttctggcgat
gagaaaggatttgtcgtctgttggaatttggataaaggcagcacagaccggttttatcca
gatggaagtagtcagatgcatcttggatgtcttacttgttcacctcaaaatgaaaacatt
gtcgcaattggttataaatcaggagcagtctcattgatggacataagaagaaatggaacg
gtcatcaagaaactgagaggtcacactaatgaagtacattcgattgtgtggtcgccattt
caagatgagaatttagtgttctcaagtaaagggcagaaggatgaagaggagattgccgta
aatgggtacaagacgcaagatgataatggaaaaattttgaagagtaagaaatactatcta
ccgggatatgagggtgttattgcgactggtagtaaagataagactatcaaactatggagt
ataagtgaaggaaaatgtagaagaacattgaagattcctaacacagtcaaaaagggccgc
aaaacaaatgaggatgttgcacgattatattctgccatacattggccgcaaaattcaaag
accaaattcatatcatctgggtacaatggagacttagtagtttgggatataagccctgca
gcagaaaacttatttgaggttttagcaagtcaaactcatgatgccggtcaccatcgaata
gtcttcaacattgcacatggctcaaatttatcaaactccattgtgactacgtctatggat
agacaattattgcattggactattccatccgagtctgccagtgccagtcgcggccccgat
tgggttttacccactttgggtggatttgtatattccatatcagtatcacctaaagatccg
agtgatgcagtaggtgtgggggatggaatgatcagagtatggaaaactnagagtcctaaa
agtgcttatgatattacaacattatggcagggaataaaagaaaaggttatggcacttgca
tggcatcctaacaaagaaggttgtcttgcttttgcaactgaagatggaaaggtcggcata
tatgacacactttcgttgcgaccacctgttgtggctgaaacatatcacatgaaaccggtg
tatgcattgtcttggggccaaaatgctcccccaatatcaacagctaccaataaaaataaa
aaccttcatttattttcgtgcggcggtgatggaaaaattttacaacataacccatcgaac
atgtccaaagatgccgtcgatattgatcaaattatttcaagttcaaattcatctcattct
cctggtaaacatagtgaagtatcttggaatcaagatgagagtctgcttgcaattggaaat
gacaatggaacaataaacatctacctctcaccgcatctcgatcatatattagaaatcaaa
agtcattcaaagattgtaaattgtgtaaaatggagacctaacgacgaagaaactaacaat
aagtttcttgaaattgtcactggatccaataactccattattcacgttcatgatttgaag
aaaatattcttggaaaatgaatacacacttggtaatgaactagaaaatcctatattggta
tcaaaaccacatcgatcacttgtcggacatttatcaagaatcactggattgtcatataat
cctagaaatacgagtcagattgtgtcgtcttcatatgacagtacagcacaggtatgggac
acagaaacagaaaagccgttgcataatttccgagggcatcatggtcgtctcatgtgcgtt
atatggagttctgttattgatgaacaaaaccctgaaaagtcaagtggaatcatttatact
ggtgctgatgactatactgtacatggatggtatgctgatgatcaacaacatactgaacca
gtaaaagcgcttcctgattttgggtttggtccaaaaaataaatttcaaaataaaaagaaa
ggaagaaacaaaaaaactcatcaaaattcaacacaaccaactacatcattgcaacagaat
actgataccactgttaatggaattggaactgagtcacgtgatgaggcttcaattgacttg
aattatttgttagagaagaaaaaggcagaattgttggcaaccattaactgcgaccttcct
gtgcaaaaaaatgaaaatgtatctgtagaaacaaaaacatcaccaactgggaaaatgtca
cctggatcaaaatcaagtccagcgacttcgaggataaagttggtttcaacacagaggtcg
gatggagctatgatgaaaaaatctggcacacaacctgatgatgatttgtttggaagacgc
aagagaagactgaaaaatatgtttccacaatctgtgacaatggacaatagaaaaaagtcg
gaacaacatcaagattgtattaaaatagttcaatggaacactaaagatcaatctgactct
aaagacagtttattgtttctacctggttcttctgataatatcaatttaggtttttatact
gacaggaaggctgcctttaggatgatgaaaaacgaagcagacaaacttcaaggggatgaa
attactgagggaaattacaatctgagaatttggatgggtgatattgttggtaccattgaa
gatgcaaaggaaaagatgcaactgactgatcaactggttgccatggcaccaattgctggt
caagcattctggcgtaaaaccgcccatgcattcgcgaaacaactaattgcagaagatcat
catttacatgcagtacattatctcttagtctgtgacaaagtacaagaagcaatacaagta
ttattagacagtcgacattacagagaagcagttgcacttgctaaagctcgtctttgtgat
gaagacccattgttgaaggaaacagtgagaatatggggacagaagttgaaaagcggagga
tcagttgaacttgctgcaaagtgttttgctgccataggagattttaaggaggcgtcagct
tcactcgctcagcgtgcaacttctggtgcatctacaataactgatagtgacgtatcatca
ttgtgggcagcagcaagcgtagcaaaaactgccaatgaagaggtagttgcatctggatat
gcaaatagggctcttcaaacagtttgccttcggacttggaactggttggaaaacaacgaa
ttcctgtcagcattccataatttaaaagcttacaggttcatctctgttgtccatgaaata
ttggtatcaagattaatcaggaaagctggtttaagggaattacctacaacaagaagatcg
aattggaatggaccagatttttatcacaaagactattcactgccatcagcatttcacaac
atattgttcctagcatggggaaaacatgctgaagagagtggtgacagtaatgcttcaatc
ctgaacgatttcaattcagaaaccattattcaaattcataatgaagcaatgcaatatcaa
caggataatccaactgaatcaaggatttcactccaggttgccgtctcgcttgctgcagcg
atttgcacttcaccaactatgctgaggaaacatgtcgttgattctgacagtatttcggaa
aatatttggataaaacatgctgttcataccgcagttttgttgtcaaaatcacaaacaata
aatacgaagatcttgatagaaattttatccatcctatgtgaaataatatcatggataaag
ccattgcattttgaggttgcgaatggtgaggcagaatgttcaaaatcaattttaaacggt
gccgccgatttgaatataaatgtagaaatgatggtagcgtctgatgaaaatatttttgat
caaatgtctttgccatattctgaaatcataaaacatggtgtacattttctttcaactcct
gttactgatataagtggggatttgtcaaaatttctgaaacgtttattaactgaatatcaa
accggttttgtttcataa
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integrated database retrieval system
