Styela clava (leathery sea squirt): 120341368
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Entry
120341368 CDS
T07291
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04120
Ubiquitin mediated proteolysis
sclv04137
Mitophagy - animal
sclv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120341368
04120 Ubiquitin mediated proteolysis
120341368
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
120341368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sclv04131
]
120341368
04121 Ubiquitin system [BR:
sclv04121
]
120341368
03029 Mitochondrial biogenesis [BR:
sclv03029
]
120341368
Enzymes [BR:
sclv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
120341368
Membrane trafficking [BR:
sclv04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
120341368
Aggrephagy
Other aggrephagy associated proteins
120341368
Xenophagy
Other xenophagy associated proteins
120341368
Ubiquitin system [BR:
sclv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
120341368
Mitochondrial biogenesis [BR:
sclv03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
120341368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
IBR
IBR_1
ubiquitin
Rad60-SLD
Ubiquitin_5
Pox_G5
Zn_ribbon_4
Motif
Other DBs
NCBI-GeneID:
120341368
NCBI-ProteinID:
XP_039265792
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MCTTNALDIRFMLHKDKTSRLMKLPLNIKVCDVKSMLCEDSNIPFEECEIIFCGKAMQDD
KTLNEYTLSSQTTLHVVSYPRIKDEELISRQQYYVGRNSYLTGIWPHRQHTHFPFIKLQN
YLNEEKLCSKHPQFYVYCKHTCFKVTPGKLRVQCANCKEDSIILQCEPEQWSDVLQAGKI
FGQCYSEECGGDVCDAEFYFKCSVCRSPAPSETAVSLPNVISNIQDVLCLTCLDSCNPVV
TFPCSPEHVMCLPCFEEYSRTKLRDRQMIVCENIGYSVTCPMGCEGSFMCDTHLFHILGA
DEYQMYQAFSAEECLIRKMKGMICPNPKCGTGLFPDIPAIFENNTKITCSNCGHMFCSNC
RESYHGTSDCESQFPLLAGSSVMVRDYFESIKTIREISKNCPNCKVPTERSGGCMHMTCK
MCLYEWCWNCLTRWNYNCQADHWFN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtgcactaccaatgcattggatattaggttcatgttgcacaaagacaagacttctaga
ctaatgaaattgcctttgaatataaaagtgtgtgatgtcaaatctatgctttgtgaagac
tctaatattcctttcgaagagtgtgaaattattttctgtggaaaggcaatgcaagatgat
aaaacactgaatgaatatacccttagttctcagacgactctgcatgttgtctcttaccct
cgtataaaagatgaagaattgatatcaagacaacaatattatgtgggtcgaaattcatat
ttgacaggaatatggccacatcgtcaacatactcatttccctttcatcaagttacagaat
tacctgaatgaagaaaaattatgttcaaaacatcctcaattttatgtttattgcaagcat
acttgctttaaagttacacctgggaagctgcgtgttcagtgtgccaattgtaaagaggac
agtattattctacaatgtgagcctgagcaatggagtgatgtccttcaggcgggaaaaata
tttggccaatgctattctgaggaatgtggaggtgatgtttgtgatgcagaattctacttc
aaatgctcggtttgtcggagtccggcaccttctgaaactgctgtatccttaccaaatgtt
atcagcaacattcaagatgttctctgtcttacctgccttgattcatgtaatccggtcgtg
acgtttccttgtagccctgaacatgttatgtgtttgccatgttttgaagaatattctcga
acaaaacttcgtgatagacaaatgatagtttgtgaaaatatagggtattctgttacctgc
ccgatggggtgtgaaggttcatttatgtgtgatacacacctttttcacatacttggggct
gatgaataccaaatgtatcaagctttttctgcggaagaatgcttaattcgtaaaatgaag
ggaatgatttgccccaatcctaaatgtggaactggcttgtttccagatatacctgccatc
tttgagaacaacacaaaaattacctgctcaaattgtgggcatatgttttgttcaaattgt
cgtgaatcatatcatggaacctcagactgtgaatcccagtttcctctgttggctggaagt
agtgttatggtaagagactatttcgaaagcataaaaaccatcagggaaatttcgaaaaac
tgtcctaattgcaaagttccaacagaaagaagtggtggttgtatgcatatgacttgtaaa
atgtgtttgtatgaatggtgttggaattgccttacacgatggaattataattgccaagca
gatcactggtttaactga
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integrated database retrieval system
