Styela clava (leathery sea squirt): 120341699
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Entry
120341699 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120341699
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120341699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3535
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_2
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
120341699
NCBI-ProteinID:
XP_039266212
LinkDB
All DBs
Position
Unknown
AA seq
1828 aa
AA seq
DB search
MATSHKGTSRLDRLFILLENGTTSTTRKAAAKQLGEVQKKHPHELNSLLGRLMTYIQHKE
WDTRIAGAEAIKSVVAEVPLWKPEPSLKKDPALKEVPRVQNRLKFSQINIEQIMNGAQLL
LSSSGEEFESVEEEGIDARERVLRARRRIEKKMGLTVGNGTSLGVSSSDLFIDEDLVAPV
ESSTKIKQSANKRNIQKKPCGDVMAQLTEGMSNREKNRAKRKAKIMMKQNSRDGTQENDS
QPPKKRKKKVEVQENEEENSYVKQAPNHEPSPDLWEEWPFEWICEELLNLLFSSTWEWRH
GACLALRDILSIHGSGAGIVRGDSQTEMEDHNNFWLEDAAIRMLCVMVLDRFGDFVSDQV
VAPVRESCAQALGVLTRSLNIKTVSEILNVLLYLTKTREWEVRHAGFLGIKYMFAAREDL
HEKNVSQCVPALIKGLQDGDGDVKSVSAEALTPITSYLVETESAADKLYQLVQVLCDSLQ
ELDELTASTQSILTLLSKIVSSICSSKLSLYMNLQDTMSKLWIFTQHSTPSVRKAALLTL
NTLLKSLHSHSKIPWFNVLAMNGIWSLAKCCITESNREIQLMVVEVWTKFCSKIPQLVLC
EACQLYFTTLVSMAAQPDTAPFPKSMFAASTEQEVLKEGETEELLYYIGGMPSNKRNEND
ETRVEIVTRTRLQFARMLGILCGFATSTKEADIQSQNILQQTFHSITHHILTYVNSRFAI
QRIVICMILSSWWETKESQPSPEIYNSLLNSLTEDLYFNEISSLFIQVQSEIKNIFMMTS
KYFQQPLTFPIKPVYSLEDALTLSTEFESKLQDSNFDDLKESHQRLFFTANEAQQEHYTL
QRTVRSYVSHCLVVASFSSTSTTVNQSLSIVHLPKMNPIIRPLMEGLKREENQIHRNVIS
EALTYLLDICSNRNPCPNSKLIRNLCQFLKGDSGICPDLLNPTTGISSEILNQSPFSEDD
STNKIIITLLRNRVALIQSSENKRRKHFSPRHDKSSSLENEPNIARDGALVCMKSLCHHF
NENIFETLPQLWTMICQPHVEENQMNGDVENGESEEKLRDKMLSLLIVEALAPVVNTDVA
KMKVLSLLPQMFNLVWTSYSSVRYVCSRCLSVLAKRFPSEVMTKLVGEFLPSIDSSDLYK
RMGIIELVSNIIDCLKTEILPYTVLLIVPLLGRMSDHNTQVRLIATQCFASLIQYLPVEA
SVPDAPDLPSVLVEKRKHERRFLEQLLDSSSLDQYPIPVPINAKLRSYQQDGVKWMAFLN
RYKLHGVLCDDMGLGKTLQSICILASDHFYRAKTFHETNDSASAPIPSLVICPPTLTGHW
VDEVERFCGKSHLDPLHYVGNPRERQRLQTKLSKHNLVIASYEVVRNDVEFFSKFDWNYC
ILDEGHMIRNGKSKLTLCIKSLRSNHRLILTGTPIQNSVLELWSLFDFLMPGFLGSEHEF
NCRYGKPILASRDAKCSSKEQEEGVMAMEALHRQVLPFMLRRLKEDVLQDLPPKIIQDYY
CNLSPLQVRLYEDFAKTKAKKEVDTSITHVSAEQTQGSRAKQTSHIFQALQYLQKVCNHP
ALVLTPCHPEYQQVINELAKDKSSLHDIQHSSKLMSLKQLLLDCGIGVPTDNSNNIDSVV
GQHRALIFCQHKSMLDIVEHDLLRKHMKSVTFMRLDGSVVAANRHQIVSKFNNDPSIDLL
LLTTKVGGLGLNLTGADTVIFIEHDWNPTVDLQAMDRAHRIGQKRVVNVYRLITRATLEE
KILGLQQFKLNIANTVISTENSSLHSMGTNQVLDLFTIEKGAEKKKIREKDSSGKGLRTL
MDDIGDLWDQNQYDTEYNLDNFMESLVS
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatcccacaaaggcaccagccgtctggatcgtttatttattctattggaaaat
ggaacaacgtctactacaagaaaagctgcagcaaaacaacttggtgaagttcagaagaaa
catccgcatgaactaaatagtttattaggaaggttgatgacatacatacaacacaaagaa
tgggatacaagaatcgctggtgcagaagctataaaatctgttgttgcagaagtcccactc
tggaaaccggaaccttccttgaaaaaagatcctgctttgaaagaggtcccgagagtacaa
aatcgacttaaattttctcagataaatattgagcaaattatgaatggggctcaactttta
ctcagctcatctggagaagaatttgagtcagttgaggaagagggaattgatgccagagaa
cgagttttgagggcgcgaaggagaatagaaaaaaaaatgggacttaccgttggtaatgga
acatcattaggcgtttcatcaagcgatttattcatagatgaggatctcgttgcaccagtg
gaatcttcaaccaaaataaaacagtctgcaaataaacgaaatatacaaaagaagccatgt
ggtgatgtgatggcccaattaactgaaggaatgagcaatagagagaaaaatcgtgcaaaa
agaaaagcaaaaataatgatgaaacaaaattctagagacggaacccaggagaatgacagt
cagcctccaaagaaacgaaaaaagaaggttgaagttcaagaaaacgaagaagaaaacagt
tatgtcaagcaagcaccaaatcatgaaccatcacctgacctttgggaagaatggccattt
gaatggatctgtgaagaacttctcaatcttctattcagttcaacatgggaatggagacac
ggtgcgtgcctggcattacgagacatactcagtattcatggatcaggagcaggaattgtc
agaggagattctcaaacagagatggaagatcataataacttttggcttgaggatgctgct
atacgaatgttatgtgtaatggtacttgatcgattcggtgattttgtgtctgatcaggtt
gttgctccagtgagagagtcttgtgcacaagctttaggagttttaacacgatcattgaac
attaaaactgtgtcagaaattttgaatgtattgttgtatttgacaaaaacaagagaatgg
gaagttcgtcatgcaggttttcttggaatcaagtatatgtttgctgctagagaggatttg
catgaaaagaatgtgagtcagtgcgttcctgcattaatcaagggacttcaagatggagac
ggagatgtcaagagtgtttctgctgaagctttgactccaatcacatcttatctggttgaa
acagagtcagctgctgataagttgtatcaacttgtacaagtgttatgcgactctctgcaa
gaattagatgaacttactgcttctacacaatcaatactaacgcttctttcgaaaattgtt
tcatcaatttgttcatccaagttaagtctgtatatgaatttgcaagataccatgtcaaaa
ctttggatttttactcaacactcaacacctagtgtgaggaaagctgctttgttaaccctc
aatacattattgaaaagtcttcattcacattcaaaaattccctggttcaatgtccttgca
atgaatggaatatggagtctcgcaaaatgttgcatcacagaatctaatagggaaatacaa
cttatggttgtggaggtttggacgaagttttgcagcaagataccacaattagttttgtgt
gaagcatgtcaactatatttcacaacgttagtttcaatggctgctcaacctgacactgct
ccttttccaaaatctatgtttgcagcttcaactgaacaggaggttttgaaagaaggcgaa
acagaagaattgttatattatatcggtggaatgccaagtaataaaagaaatgaaaatgat
gaaacaagagttgaaattgttacgagaacaagactgcaatttgcaagaatgttgggaatt
ttatgtggatttgctacaagcacaaaggaagctgacatccagtcgcaaaatatattacaa
caaacgtttcatagtattacacatcatatattgacgtatgtaaattcaagattcgcaata
caacgcatagtgatatgcatgatattatcaagttggtgggaaactaaggaatctcaacct
tctcctgaaatttataattcgctgctcaactctctaacagaagatttatattttaatgag
atttcttcattgtttattcaagtgcaatcagaaattaaaaatattttcatgatgacatcc
aaatattttcaacaaccattgacgtttccaatcaaaccagtgtatagtttggaagatgcc
ttaacgctttccacagaattcgaatcaaaattacaagattcgaacttcgatgatttgaaa
gaatcacatcaacgcttatttttcactgctaatgaagcgcaacaagaacattatacttta
caacgtactgtgcgttcttacgtttctcactgtctcgtcgtcgcatcattttcatctact
tctacaactgtgaatcaatctctatctattgtacatttgcctaaaatgaatccaatcata
agacccttgatggaaggattaaaaagagaagaaaaccaaatacatcgtaatgtaatatca
gaagcacttacgtatctgctggatatttgttcaaatcgtaatccatgtcctaactctaaa
cttattcgtaatttatgtcaatttttaaaaggagattccggtatttgtcccgatttatta
aatccaactactggtatttcatctgagattctgaatcaatctccgttttccgaagatgat
tcaacgaataaaataattataacattactgagaaatcgtgttgctttaatccaaagttca
gaaaataaaagaaggaaacatttctctccgaggcatgataaaagttcaagtttagagaat
gaaccgaatattgcacgagatggagcattagtttgtatgaagtctctctgccaccatttc
aatgaaaatatatttgagacgttgcctcaattatggacaatgatttgccaacctcatgtt
gaggaaaatcagatgaatggagatgtagaaaatggagagagtgaggagaaattgagagac
aaaatgttgagtcttctgattgttgaagctctcgctcctgttgtaaatactgatgtagcg
aagatgaaagttttaagtttgcttcctcaaatgttcaatttagtttggacgtcgtattct
tctgttagatatgtttgtagtagatgcctttctgttctcgctaaacggtttccttcggaa
gtaatgacaaaacttgtgggagagtttcttccatcgattgattcttctgacttatataaa
agaatggggatcattgagcttgtgtctaatattatcgactgtttgaagactgaaatccta
ccatacactgtgctgcttatcgtaccattgctcggtagaatgagtgatcataatacacaa
gttcgattgattgctacacaatgttttgcgtctttaatccagtatttacctgttgaggct
agtgtacctgatgcacctgatctaccatcggtattagtcgaaaaacgaaaacacgaaaga
agatttttggaacaattgctcgatagtagttctttagatcaatatcctatacctgttcct
atcaatgcaaagttgcgatcttaccaacaggatggtgtgaagtggatggctttcttgaac
aggtataaattacatggagtcttatgtgatgatatgggacttggaaaaactcttcaatca
atttgcattctggcatcagatcatttctatcgtgctaaaacttttcatgaaactaatgat
agtgcaagtgcacctattccctctcttgtgatttgccctccaacactgaccggtcactgg
gtggacgaggtggagagattttgcggaaaaagtcatcttgatccgttgcattatgttggt
aatccaagagagagacagaggttacaaacaaaattgtcgaaacataaccttgtgattgca
tcatatgaagttgttcgaaatgatgtggaatttttcagtaaatttgattggaattattgt
atattggatgaaggacatatgataagaaatggaaaaagtaaattaactctttgtataaaa
agtttgcgttctaatcatcgactaatattgacaggaactccaatccaaaacagtgtattg
gaattatggtcattatttgattttctgatgcctggctttctcggatcagaacatgaattc
aattgtcgatatggaaaaccaatcctcgcaagtcgtgatgcaaaatgttcttcaaaagag
caagaagaaggtgtgatggcaatggaagctcttcacagacaagtgttaccatttatgctt
cgtagattgaaagaagatgttttacaagatcttccaccaaaaataattcaagattattac
tgtaatctcagcccattacaggttcgtctgtatgaagattttgcaaaaacaaaagcaaag
aaagaggttgacacgtctataactcatgtcagtgccgaacaaactcaaggttctcgtgct
aagcagacttcccacatatttcaagcgttacaatatctacaaaaagtatgcaatcatcct
gcattagtcttgactccatgtcatccagaatatcaacaagtaatcaatgaattagcaaaa
gataaatcttctctgcacgatattcaacattcatcgaagttaatgtcattgaaacaactt
ttactcgactgtggaatcggagttcctacagacaacagtaacaacatagattcagttgtt
ggacagcacagagctctgatattttgtcaacataaaagtatgctggacatcgttgaacat
gatttattgagaaaacatatgaaatctgttacttttatgagattggatggttctgttgtt
gctgcaaatcggcatcaaattgtatcaaaattcaacaatgatccatctatcgatttgctt
ctgctgacaacaaaagtaggaggtttgggtttgaatctcactggagctgatactgttata
tttattgaacatgactggaatcctacagttgatttacaggcgatggatcgtgcacatcgt
attggacagaaacgggttgttaacgtttatcgattaattactcgagcaacactcgaagaa
aaaatacttggattacaacaattcaaattgaatattgcgaacacggtgatcagcacagaa
aatagtagtttgcacagtatgggaacaaatcaagtgttagatttattcactattgaaaag
ggagctgaaaagaagaaaattcgtgaaaaagattcttctggtaaaggattgcgaactctc
atggatgacattggtgatttatgggatcaaaatcaatacgatactgaatataatttagat
aatttcatggaatctcttgtttcataa
DBGET
integrated database retrieval system
