Styela clava (leathery sea squirt): 120342061
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Entry
120342061 CDS
T07291
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120342061
03036 Chromosome and associated proteins [BR:
sclv03036
]
120342061
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120342061
Chromosome and associated proteins [BR:
sclv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120342061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SH2
S1
HHH_3
S1_RRP5
Tex_YqgF
Spt6_S1
HHH_9
SPT6_acidic
Tex_N
RuvX
Motif
Other DBs
NCBI-GeneID:
120342061
NCBI-ProteinID:
XP_039266664
LinkDB
All DBs
Position
Unknown
AA seq
1705 aa
AA seq
DB search
MSDFFDDEAEESSDEEFVVTKKKKPVLSDDDAPSEDDAEDEEEVDKKLAAEADDQGNIRD
LIDDDIDDDEDESDASDSDVSSEDEEPGGKHRDVTDEEEKEEEIRTKRSKRKHDHRLEDD
DLDLIEENLGVKIKRKKFSRLKTVSSDEDDSDKEEDTGAGGHRQNVANEIFQGEEYDYEP
GQDHRQEPVIAPVDEEGEESDESDVDDFIVDDNGEPISKPHQPGQKRKKKGDAALQNLHD
IFGVDFDFSEFEKYGDEYEDEEMEMEEDYIDEMDEEGVIVDSEMRPKKKSRKAKKKKSIF
DVYEPDTLERGYFTDFDAEIRNADVPERFQLRTIPVRPADNAELELEADWIYKHCFVETT
ISKQENYDDIGASSSLNRKPQSSVAKIQDSLNFMRNQQFEMPFIAFYRKEYVEPELNIYD
LNKIYHWDEKWTQLLNRKANLTRLLQKMQTYQYEQISRDPDKPLGDNIRALTDADIERIQ
NVQTMDELKDVYAHFLLHYGRDIPKMQNALRTQRQRERNEDGTSAETDEAQASDLKQASR
RDMYTVCLNAGLGGVANKFGLTPEQFGENLRDNYQRHETEQYPAEPKDLAQDFITPQFDS
IEKVLEGARYMMAMQLAREPLVRQCVRQTFQERAKINVNPTKKGKKEIDEAHPLFGVRWL
RNKPVRDLNGPCFLHLANGELERLVEIDIRIDMKDSDISGTHTYFEEIKQLYYRDEFSHL
VQEWNSQRSQVIDSMLNKILYPELVKETRATLLREAREGIINHCALALRKWLSVAPYQPE
EREDEEEDEGRQGCVVMAVSYSDNRDSATFATVISGDGEVTDFLRLPFMRMRRNAPIEDD
RKRKEKDLDNIKNFITKRKPHVIVIGAEDRYALMLQEDIKECVTELEQEGSIPAISVELM
DNELAAVYAATKRSETDFRDYPVELRQAVSLARRMQDPMLEFSQLCSQDDDLMCLKFHPL
QDQVEKDQLLTSLVEEFVFRACEVGVDVNRAISHPHTANIVQFVCGLGPRKAAHLVKVLK
QKNGRLENRSNLVTVCRMGPKIFINCAGFIKIDTSSLGDSTDVYIEVLDGLRVHPETYEW
ARKMAVDALEYDESAEDANPSSALEEILESPERLKDLDLDAFADELERQGYGNKGITLYD
IRNELDCRYKDLRTSYRAPTAEERFSLITKETLSSFQEGKLVTCRVVGIAYRRPKAEQLD
QAEPHKDENTGTWSCSFCGTGGFGELSEVWSHLDSGDCLGKAVGVRTRLDNGLSGFISTD
RLSDSKVTNPEERVKVGMTVHCRITKIDIDKFQVDLSSKSSDLRNESEQWGSVFDTYYDH
EAEEKDKQSSQNNDKNKNRTTYIKRVIAHPSFQNIGFKEAEKVLESMDQGDVIIRPSSKG
ADHLTATWKVGDHVCAHIDIREEGKENSFSLGKTLLIGNDEFEDLDEIIARFIQPMAANA
RDILNHKYYRESNGGKKDVLEELLKQAKKNAPSRIPYFMSECKELPGKFLLSYMPRTKPK
HEYVTVLSDGFRYRGQVFTTINQLFKWFKEHFRDPIPHHLMPSRTPAGASSNSDSFNVAA
IQNALQKMQTPRGQSGPFATPLPRGFGVTPNAAVIPHTPNYPPQQTPNYGQQRTPSSFTP
RNRTPVTWGHPPAAVPNRTPSGGGNIAATDWGKAAEEWARKKVSKSTPRMTPSGTPRGPR
TPAGSYKGTPRTPTHHTPRGGGTPV
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatttcttcgatgacgaagcagaagaatcatctgatgaggagtttgttgttacg
aaaaagaagaaaccagttctgagtgacgacgatgctccttctgaagatgatgccgaagat
gaagaagaagtggataaaaaattagctgcagaagctgatgatcaaggaaatattcgtgac
ctgatcgatgacgatatagatgatgatgaagatgaaagtgatgccagtgattcagatgta
tcgagtgaagatgaagaaccaggaggaaaacacagagatgttactgatgaagaggaaaaa
gaggaagagatcagaacaaaacgttcaaagcgaaaacacgaccatcggcttgaagacgat
gatcttgatctaattgaagaaaatttgggagtaaaaataaaaagaaaaaaattcagcaga
ttgaaaactgtttcatcggatgaagatgacagtgacaaagaagaagataccggagcagga
ggacatcgacaaaacgtcgctaatgaaatcttccaaggagaggaatatgattatgaacct
gggcaggatcatcgtcaagaacctgttattgctccagttgatgaagaaggtgaagaatca
gacgaaagtgatgttgatgattttattgttgatgataacggagaacctattagtaaacct
catcaaccaggacaaaaaagaaaaaagaaaggagatgcagctcttcaaaatttacacgac
atattcggtgtagattttgacttcagcgaatttgagaaatatggtgacgaatacgaggat
gaagaaatggaaatggaagaagattatatcgatgaaatggatgaagaaggagtaatagtt
gacagtgagatgcgtccaaagaagaaaagcagaaaggcaaagaaaaagaaatcaattttt
gacgtatatgagcctgacactttagaaagagggtatttcaccgactttgatgctgaaatt
aggaatgctgatgtcccagaaagatttcaacttcgtacaataccagtcagaccggctgat
aatgcagaactggaattagaggctgattggatttacaagcattgttttgttgaaacgact
atttcaaagcaggaaaactacgatgacataggcgcttcatcatcactaaatcgaaaacca
caatcttctgttgctaagattcaggattctcttaacttcatgagaaatcaacaatttgag
atgccgtttattgcattctacagaaaagaatatgttgaacctgaattgaatatatatgat
ttgaataagatatatcactgggatgagaagtggactcaacttctcaacaggaaagcaaac
ttgacaagacttttacagaaaatgcaaacatatcaatatgaacagatatcaagagatcct
gataaacctttaggagataatatacgtgctctcactgatgccgatattgagagaatacaa
aatgttcaaaccatggatgaattgaaagatgtttatgctcattttctacttcattatggt
agagatattccaaagatgcagaatgcactcagaacacaaaggcaaagggaaagaaatgaa
gatggcacgtctgctgaaactgatgaagctcaagcaagtgacctaaagcaagcttcaaga
cgtgatatgtacactgtttgtttaaatgcaggactaggtggtgttgcaaataaatttggc
ttgacaccagagcagttcggagagaacttgcgagataattatcaacgacatgaaactgaa
caatatcctgctgaaccaaaggatcttgctcaagactttattacaccacagttcgattca
attgaaaaggtattggaaggtgccagatatatgatggcaatgcagcttgctagagaacca
cttgttcgacaatgtgttcgtcaaactttccaagagcgtgcaaaaattaatgtaaatcca
acaaagaaaggaaagaaagaaattgacgaagctcatcctttgttcggcgttagatggttg
agaaataaaccagttagggatttgaatggaccatgcttcttgcatctcgctaatggtgaa
cttgaacgtttggttgagattgatattcggatcgacatgaaagattctgatatatcagga
acacatacttattttgaagaaattaaacagttgtattacagagatgaattcagtcatctg
gttcaagaatggaattcacagagaagtcaggtcattgattcaatgctgaataaaatatta
tatcctgaattagtgaaagaaacaagagcaactttgttacgggaagccagggaagggata
ataaatcattgtgctctagctctgagaaaatggttgtctgttgctccatatcaacctgaa
gaacgtgaagatgaggaagaagacgaaggaagacaaggctgtgttgttatggctgtcagt
tatagtgataacagagattcagcaacatttgccactgtaatatctggtgatggagaggtt
acagatttccttagacttccgttcatgagaatgagacgtaacgcacctatagaagatgat
agaaagaggaaagaaaaagatttggacaatatcaaaaatttcatcactaagaggaaaccc
catgtaattgtgatcggagctgaagacaggtatgcactcatgttgcaagaagatattaaa
gaatgtgttacagaacttgaacaagaaggaagcattcctgctatcagtgttgaactgatg
gacaatgaactagctgctgtctatgcagctacaaaaagatctgaaactgacttccgagat
tatcctgttgaattgcgacaagctgtatcattagcaagaagaatgcaagatcctatgcta
gaattttcacaactatgctctcaagatgatgatttgatgtgtttgaaatttcacccttta
caggaccaagttgaaaaggaccaacttcttacaagtcttgtagaagaatttgtatttcgt
gcctgtgaagttggtgttgatgtaaaccgagccatatctcatccacatactgccaatatt
gtacaatttgtttgtggccttggtccaaggaaagctgctcacttagtcaaggtcttgaaa
caaaagaatggtagactggagaatcgatctaatcttgtaacagtttgtcgaatgggtcca
aaaatattcatcaattgtgctggatttataaagatcgatacaagttcattaggagacagc
actgatgtatatattgaagttctcgatggtttacgtgttcatcctgagacatatgaatgg
gccaggaagatggcagtcgatgctttggaatacgatgaatcagcggaagatgcaaatcct
tcatctgctctcgaggaaattctggaatctccagaaagattaaaagatcttgatttggat
gctttcgctgatgaactcgagagacagggatatggcaacaaaggcatcacgttgtatgat
atcagaaatgaattagattgcagatataaagatttgagaacttcgtatcgagctccgact
gccgaggaaagattttctcttatcacaaaagaaacactgagttcattccaggaagggaaa
ctagtgacatgccgcgtggtaggaattgcgtacaggcgaccaaaagcagagcaacttgac
caagcagaaccacacaaagatgaaaatacaggaacatggagttgttcattctgtggtact
ggtggttttggagaactcagtgaggtttggtctcacttggacagtggagattgtcttggc
aaagctgttggtgttagaactagacttgataatggtttaagtggattcatttctacagat
cgtctgagtgattccaaagttactaacccagaagaaagagtaaaggttgggatgacggta
cattgcagaattacaaagatagatattgataaatttcaagttgatttgtcatcaaaaagt
tcggacttgagaaatgagagcgaacagtggggatccgtgtttgatacttattatgatcac
gaagcagaagaaaaagacaaacagagttcacagaataatgataaaaacaagaacagaaca
acctacatcaagcgtgtaattgctcatccatcatttcaaaacattggtttcaaagaagct
gaaaaagttttggaatctatggatcaaggggatgttattataaggccaagtagcaaaggt
gctgatcatttgacagcaacttggaaagttggtgatcatgtctgtgctcatattgatatt
agagaagaaggaaaagaaaattcgttcagtcttggtaaaactctccttattggaaatgat
gaatttgaagatctggatgaaattattgctcgttttattcaaccaatggcagcaaacgct
cgtgatattctcaatcataagtattacagagaatcaaatggtggaaagaaagatgttttg
gaagaattattaaaacaagctaagaaaaatgctccgtccagaattccatattttatgagc
gaatgcaaggaattaccaggaaaatttctcttatcgtatatgccaaggacgaagccaaaa
cacgagtatgttaccgtgttgtctgatggatttcgatatcgtggtcaagtgttcacaaca
ataaatcagttatttaaatggttcaaagaacatttcagggacccaattcctcaccatctc
atgccatcaagaactccagcaggtgcctcgtctaattctgattccttcaacgttgctgca
atacagaatgcattgcagaaaatgcaaacaccgagaggacagtctggaccatttgcgacc
ccactgccaagaggatttggtgtcacgcctaatgcagctgtaataccccatacacccaac
tatcctccacaacaaactcctaactatggacaacagcgcactccaagcagtttcactcct
cgtaatcgaacacctgtgacctggggtcatcctccagcagctgtgccaaatagaacacca
agtggtggaggaaacattgctgctaccgattggggaaaagctgcagaagaatgggcaagg
aaaaaagtatctaagtcgactcctagaatgaccccttcgggtacacccaggggacctaga
acacctgcaggaagttacaaaggtacaccgaggacaccaacccaccacacacctcgtgga
ggcggcacacctgtgtga
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integrated database retrieval system
