Styela clava (leathery sea squirt): 120342140
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Entry
120342140 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1-like
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sclv03036
]
120342140
Chromosome and associated proteins [BR:
sclv03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120342140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CDH1_2_SANT_HL1
CHD1-like_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
120342140
NCBI-ProteinID:
XP_039266770
LinkDB
All DBs
Position
Unknown
AA seq
1916 aa
AA seq
DB search
MSDFSSSSASGSSSSDDDEDNVGDTSGSDDSSSDDSDGKMDEDSKQDLQQSWMLPKRSIT
EKNIEEENANSQNTSNDISKNATNTSGSEDVSVDDNKSSSNSGSEDESKGGFPRKHIKED
LRTLWESNPQIYGVRRSSRARKEPQRLTVLQESDDSDGNRKRKKENKKGTKHGASDYTAT
LTESESEESTSGFDSPPAHHRRNKSKNGQSGRQKSSNRPSRLSQMRAKLEGRKKGNSKRN
KGRRQCDMSEESTSDDEERPQRSSTRIQKAKISYKEESQDETDSDDVVEVVEKEDEYLNS
ECIERIIDCRVGKPSATGGPTTSYATEADGDPNAGFNPENGDXEQQYLIKWKGWSHLHNT
WESEKSLQDQKVRGFKKFENFIKKKEELDAWLRVASPEDAEYFLCQQELGRDLSTTYQQV
ERVIAKSRVKNRFGFWDYQIKWKGLPYGECTWEDGELIGRSFQDKIDKFEVRQDNVNVPR
RDAKKRSHVKFIPMKQTSHWLEDLDNLQLRDYQMDGVNWLAHSWCRNNSVILADEMGLGK
TIQSITFFSYLYHIYDVYGPFLIIVPLSTIAAWQKEFQLWASFMNIIVFVGDAISRNTIR
DVEWVFPNKKLKFNVVLTTYEILLKEKVFLGSHTWAVIAVDEAHRLKNEDSLLYRSLIEF
KSHHRLLITGTPLQNSLKELWSLLHFIMPEKFDSWTDFEDRHSNERETGYTSLHGILQPF
LLRRVKKDVEKSLPAKVERILRVEMSSIQKQYYRWILTKNYRELMKGAKARVASFCNIVM
ELKKCCNHAFLTKSVEKEPANNEEKLQSLIKSSGKMILLDKLLTRLREDGHRVLIFSQMV
RMLDLLQEYLILNRLTFQRLDGSIKGEVRRQALEHFNAPGSEDFCFLLSTRAGGLGINLA
SADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVCVGSVEEDIIERAKRKMVLDH
LVIQRMDTSGKTVLSKNNAPSASTGNPFNKDELSAILKFGAEDIFKEVEGEEKEPECDID
EILRRAETTEEQTESGAGDELLSAFKFATFTIDEDEDATPTSTVRNEDEDSRDGLKEWDD
IIPESDRKIIEEEERRKQEAELYLPPRARKSLRIHNGGSDSDAGSEDSDDDASDDDDAEE
NNDASSKKKGRTRRQKDEFSGFTSTEVRKFVKSFRKFGDPLDRLDSIARDAELTVQSEAD
LKRLGVQLDNQLRDLLQAYNKSLLQNLEVDQPTQQNSKRGPSFRIGGASVSVKTTMACIE
ELQPLVEVMSKVAEERKNFRLTIPVKPIRGWDCEWTSEDDSNLLIGIYEYGMGSWEQIQS
DTSLQLSRKILRPNNEKPQAKQLQSRVEYLMKLLRKTKELGRAPTGITSVSNSALSAAAS
RVARKVRQGKKVDVNSKNDDMASSKKRSRKIKSKARVEINDDSDAEPGSLSTPMVNTTTS
ATKKDSSSRKMQKKPKSNAKNSDNTKENHSNQNTVNNKNSTETKNRKIKRKHKTKENEKL
KEEIGNTHSNDKKKSEKQKTERKASDGPVHITAAADPVPIAEDEFSGELDLDTFKDCKER
MRPVKKALKLLDKPPSGTNNDEKAQAEHMKNCILKIGDRVLECLKECHGDLVAIKTWRRN
LWIFVSKFTEFNAQRLHKVYKRASRKREQERDKNKVKHSHLGSGDHSTHRNTSDSKFEKN
SNSSSRKNVAGKKRNHSPNKNRGGAGDGPTSAPKRSFNTSESRHKERVPPHPANRKGENF
HERPDDRVGRESPGGHSRYHGQGHPRNLSRDDRRFGDEDFRFSHSGDSRRPDRSWPGEVY
RYHREEEFRRQGYEHRSMYEQQPRVPRDDRAYHRSSYGERVWPDSRHGEWDDRYYPNSDR
VGSPYRHHPRRSRSPPHQSRQYYNVGRAPGPSRHSPGHVQDAISPNKQTDSTNDVT
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatttcagctcatcttccgcaagcggctccagctcgtctgatgatgatgaagat
aatgttggagatacatcaggatcagatgatagtagtagtgatgatagtgatggaaagatg
gatgaagattcaaaacaagatttgcaacaatcatggatgttgccaaagagatcaataact
gagaagaatattgaagaagagaatgccaactctcaaaatacatcaaatgacattagcaaa
aatgccaccaacacatcaggatctgaagacgtgtctgttgatgataacaaatcttcatcc
aattctgggtctgaagatgaaagcaaaggcggttttccacggaaacacatcaaagaagat
ctgagaacgttatgggagtctaatccacaaatctatggagtgagacgatcatctcgtgct
agaaaagaaccccagaggctgacagtgcttcaggaatctgatgattctgatggtaataga
aaaagaaaaaaagaaaataaaaagggaacaaaacatggagcaagtgattatactgctact
ttgacggaatctgagagtgaagaaagtacgagtggattcgattctcctcctgcacatcat
cgaagaaacaagtctaaaaatggacagagtggccgacaaaaatcttctaatcgcccatca
agattatcacagatgagagcaaaacttgaaggacggaaaaaaggaaattccaaacgaaat
aaaggtcgaaggcaatgtgatatgtctgaagaatcaacgtccgatgatgaggagaggccc
cagcgttcatctacgagaattcaaaaagctaagataagttataaagaggaatctcaagat
gaaacggacagtgatgacgttgttgaagttgttgaaaaagaagacgaatacttgaatagt
gaatgtatagaaaggattattgattgcagggtgggaaagccgtcagcgactggtggtcca
acaacatcatatgccacagaagcggatggtgatcctaacgctggtttcaatcctgaaaat
ggagattgagaacaacaatatttaataaaatggaaaggttggtcacatctccacaacaca
tgggaatctgagaaaagcctccaggatcagaaagttagaggctttaaaaaatttgaaaat
tttattaaaaagaaggaagagttggatgcgtggttgcgtgttgcttcacctgaagatgca
gagtactttctttgtcaacaagaacttggtcgagacctgtcaacaacatatcaacaggtt
gaaagagttattgcaaaatccagagtcaaaaacagatttggattttgggattatcaaatt
aaatggaagggattgccatatggagaatgcacttgggaagatggtgaattaatcggtcgt
tcgtttcaagataaaatagataagtttgaagttcggcaggataatgttaatgttccaaga
agggatgcaaagaagcgttctcatgttaaatttattccaatgaaacaaacttcacattgg
ttagaagatctggataacttgcaactacgggattatcagatggatggagtcaattggctt
gctcattcgtggtgcagaaacaacagcgtgattttagccgatgaaatggggcttggaaaa
acaatccagagtattacatttttttcttacctatatcatatatatgatgtatatggacca
ttcttgattatagtgcctctttcaaccattgctgcctggcaaaaagaatttcaattatgg
gcttcctttatgaatattattgtatttgtcggtgatgcaataagtcgcaatacaatcagg
gatgttgaatgggtctttccaaacaaaaaattaaaattcaacgtagttttaactacgtat
gaaattttattgaaagaaaaagtttttcttggttctcacacatgggctgtaattgctgtt
gatgaagctcatcgattaaaaaatgaagactccttactgtacagatctttaattgaattc
aagtcacaccatagattgttaattaccggaactcccctgcaaaattcactgaaagaactt
tggtcgctactgcactttattatgccagaaaaatttgattcttggactgattttgaggat
agacacagtaatgagagagaaactggttacacatcattacatggtatattgcaacctttt
ctacttcgacgggtaaaaaaagacgtcgaaaagtcactgcctgccaaagtggaacgtata
ctacgagtcgaaatgtcatcaatccagaaacagtactacaggtggatcctgactaaaaac
tatcgtgaactaatgaaaggtgccaaagccagagttgcttctttctgtaatattgtgatg
gagctaaagaaatgttgtaatcatgctttcctgacaaaatctgtagaaaaagaaccagca
aataatgaagaaaaattacagtctctaatcaaaagcagtggaaaaatgattctgctggat
aaattattaacaagacttcgagaagatggtcatcgtgttctcatcttttcacaaatggtt
cgaatgctcgatcttttacaagaatatctcattctcaatcgactgacgtttcagagattg
gatggatcgattaaaggcgaggttcgccgacaagccctcgaacattttaacgcaccagga
tcagaagatttctgtttcttattatcaacccgagctggaggtctcggaattaatctcgcc
tctgcagacactgtgatcatcttcgacagtgattggaatccacaaaatgaccttcaagct
caagctagagctcacaggatcggacagaagaatcaggttaatatttatcgattggtttgt
gttggaagtgtggaagaagatattattgaaagagcaaaacggaaaatggttctagatcac
cttgttattcaacgtatggatacgtctggaaagactgttttatctaaaaacaatgctcct
tctgccagtactgggaacccattcaacaaagatgaactcagcgccattcttaagtttggg
gcggaagatatttttaaggaagtggaaggtgaagaaaaagaaccagaatgcgatattgat
gaaatattacgacgagccgaaacaacggaggaacaaactgaatctggtgctggagatgaa
cttctatctgcgtttaaatttgctacattcacgatagacgaagatgaagatgccactccg
acttccactgttcgtaacgaggatgaagacagtagggatggattaaaggaatgggatgat
attatccctgaatcggacagaaaaataattgaagaggaagagcgaaggaaacaggaagct
gaactttaccttcctccgagagcaagaaaatctttacgaatacacaatggtggaagtgac
agtgatgcaggatcagaagattcagatgacgatgcatcggatgacgatgatgcagaagag
aataatgatgcaagtagtaagaagaaaggtagaacgagaagacagaaagatgagttttct
ggattcacgagcacagaagtccgtaaattcgtaaaaagtttcaggaaatttggagatcca
cttgataggttggattcaattgcacgagatgctgaattaaccgtccaatcagaagccgac
ttaaaaagacttggagttcagcttgataatcaactgagagatttattacaagcttataat
aaaagccttcttcaaaatctggaagtcgatcaacccactcaacagaactctaagcgagga
ccttcatttcgtatcggcggtgcatcagtatctgtaaaaacaacaatggcgtgtatcgaa
gaattacaaccattagtggaagttatgtcaaaagttgcagaggaaagaaaaaatttcagg
ttaactattccagtcaaaccgattcgtggatgggattgtgaatggacatcagaagatgac
tcaaatttattaattggtatttatgagtatggaatgggtagttgggaacaaattcaatca
gatacttcactacaattatctagaaagatactgcggccgaataatgagaaaccacaagcc
aaacaattacaaagtcgagtggaatatttgatgaaattattgaggaaaactaaagaactt
ggaagagctcccacaggaattacatcagtatcaaactcagctctatcagctgcagcatcc
agggttgccagaaaagtaagacaaggaaagaaggttgatgtgaattcaaaaaatgatgat
atggcatcatcgaagaaacgaagtcgtaaaataaagtcaaaagccagagtggaaataaac
gatgatagtgatgcggaacctggatctttatcaactccaatggtgaatacaacaacctcg
gcaacaaagaaagattcaagttcacgaaaaatgcaaaagaaacctaaatcaaatgcaaaa
aattctgataatacaaaagaaaatcactcaaatcaaaatacagtgaataataaaaatagt
acagagaccaaaaatcgtaaaataaagagaaaacacaaaacgaaagagaacgagaaattg
aaagaagaaattggaaacactcattcaaacgataaaaaaaaatcagaaaaacagaaaacg
gaacgaaaagcatctgatggaccagtacatatcactgctgctgcagatccagtgccaata
gctgaagatgagttttcaggtgaactcgatctcgatacattcaaagattgcaaggaacgt
atgaggcctgttaaaaaggctttaaaactattagataagccgccatctggtacaaacaat
gatgagaaagctcaggctgaacatatgaagaattgtattttgaaaattggtgatcgagtt
ctcgaatgtttgaaggagtgtcatggtgatctagtggcaattaagacgtggagacgaaat
ttgtggatatttgtttcaaaattcactgaattcaatgcgcaacgattacataaagtttat
aaaagagcttctcggaaaagagagcaggaacgtgacaaaaataaggtaaagcattctcat
cttggatctggtgatcactcaactcatcgaaatacttctgattcaaaatttgagaaaaat
tcaaattcgtcatcccgtaagaatgttgcggggaagaaaagaaatcattcaccgaataaa
aacagaggcggtgcaggtgacggaccgacgtctgctccaaaacgttcttttaatacttct
gaatccaggcataaagaaagggttcctccacatccagcaaatagaaaaggtgaaaacttt
catgaaagacctgatgatagagttgggagagaatcaccgggaggtcattcacgataccat
ggacagggtcatcccagaaatctgtcacgcgacgatcgtcgtttcggcgacgaagatttt
agattttctcatagcggtgattctcgacggccggaccgcagttggccaggcgaagtttac
cgataccatcgagaagaagaatttaggcgacaaggatatgaacatagatcaatgtacgaa
caacaaccgcgagtgcctagagatgatagagcatatcacaggtcttcttatggagaacgt
gtgtggccggactccaggcatggagaatgggatgaccggtactatcctaactctgataga
gtgggttctccttatcgccatcacccaagaagaagcagaagtcctccgcatcaaagtcgt
caatattataatgttggccgagcaccaggacctagtaggcattctcctggacatgttcaa
gatgcaatttccccaaataaacaaactgattccacaaatgatgttacatag
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integrated database retrieval system
