Styela clava (leathery sea squirt): 120342369
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Entry
120342369 CDS
T07291
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120342369
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sclv00536
]
120342369
Glycosaminoglycan binding proteins [BR:
sclv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120342369
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
FnI_RECK
GPHH
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
120342369
NCBI-ProteinID:
XP_039267109
LinkDB
All DBs
Position
Unknown
AA seq
1482 aa
AA seq
DB search
MSAQSGMYSQRMMDGRRWHLVLALIFGVFLTTAHGQGTSIENEKHCTRNGVTFASGDVFK
PFPCEVCVCVNGELICDEVQCDKLDCPNPVVPEGKCCPVCAGGQKGQKGEPGSPGDTTGL
GIPGNPGPKGEAGDQGPAGEDGLQGQQGDIGPRGANGSPGRPGPPGPPGPPGPAGDGGGY
PSDDKGPINRGSRGVPGSMGPRGPQGRTGPSGPQGFMGPPGEPGPVGSMGPPGSPGVIGL
PGKDGKDGEDGKPGKSGAMGPSGQMGPRGVPGNPGMPGAKGHPGYNGLDGAKGENGQEGE
KGDSGETGEQGRDGALGPRGIPGERGRPGASGPPGSAGSDGAAGQSGPPGAMGPSGSRGF
PGTPGSKGERGPTGAGGPEGPQGQRGESGTPGPPGPSGATGNPGTPGGAGAKGSSGSPGI
SGPPGIPGSQGPPGPQGSVGPGGQKGNQGTPGTTGYKGDQGPKGSQGSMGSQGIQGPQGE
EGKRGQRGESGPEGAPGPVGARGSPGNRGFPGSDGAVGQKGLRGERGKPGNIGSKGSTGD
LGRTGEPGMPGSRGLSGRPGPEGREGKAGPVGKPGADGRAGAAGPPGTRGPPGQMGFTGQ
KGTSGESGKSGEKGAGGPPGPRGAAGKPGEIGPQGIAGPPGMVGERGEQGQPGSPGFQGL
PGPMGISGPPGKPGESGVPGEMGSSGPAGDRGPQGFPGARGKAGSVGQPGPRGIAGVPGD
DGLKGATGGEGSKGEQGPAGQSGVPGPRGPVGMEGAKGEIGDSGPQGKEGEPGSQGVRGP
PGLIGANGAPGPSGLKGDNGEPGEAGPVGARGEPGLRGDSGPVGSPGFPGSPGPGGQSGK
KGDSGARGQKGDSGSPGSQGPSGGPGPQGEPGVQGVKGGRGSQGAPGATGFPGPTGRPGA
PGSQGPAGQQGSGGEPGKPGPRGARGDNGKAGARGQDGPPGPAGNEGPSGKPGPPGAPGE
NGPSGEFGKPGSQGTPGLPGPPGSRGPNGQRGPNGESGKQGLPGPAGDRGLPGDVGARGL
GGPPGERGPEGPPGSPGQSGRDGSNGIKGDRGAIGIAGPPGGPGVPGPMGEAGPEGKSGS
RGDPGPPGTQGSPGPQGGRGNPGSQGARGFKGNHGDLGPRGLKGHRGYTGIQGLPGPQGK
TGENGLSGQSGPQGPRGSTGPQGPAGTDGKSGMPGPSGPQGPRGNTGSDGMPGEPGNRGP
PGPPGPPGPTVTIPFPYDGNKGPVNPLYAQDQAFADMATVSRDNEVMVALKELHSVVDSI
KAPLGLDKKSPSRSCLDLYLTAQEAGIPVKSGYKWIDPNGGCPADAIEVHCDFDTKETCV
FANQPRIVNGTNGMEGLRNNGQMANKNVFYSDMHGRRMNYDPKVENTVKSADYNSQLTFL
RLLSSTARQRVTFWCKNMVAVNDFDSNSKDHALKLKGVGDTIVSDYTTIMDECSTKPSSI
GKTVIEYMTPRVAHMPLVDIAPFVTGRVDEEFGVEFGPACFK
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcacaatcgggcatgtatagccaaagaatgatggacggacgacgctggcaccta
gtgctggcactgatttttggcgtgtttcttactaccgcacatggacaaggtacctcaata
gaaaatgaaaagcactgcaccagaaatggcgtcactttcgcgagtggggacgtttttaaa
ccatttccttgcgaggtgtgcgtatgtgttaacggcgagctaatctgtgatgaggttcaa
tgcgacaagctggattgccccaaccctgttgtaccagaaggaaaatgttgtcccgtttgc
gccggaggacaaaaaggacaaaaaggagaacctggctctccgggagatacgacgggactt
ggaataccgggaaaccctggaccaaaaggcgaggcaggtgaccagggaccagcaggtgaa
gatggattacaaggacaacagggtgatattggaccaagaggagcaaatggttcccccgga
agaccaggcccaccaggacctcccggtcctcctggacctgctggagacggcggtggatac
ccctcagatgacaagggaccaattaacagaggatcgagaggtgtaccgggctcaatggga
cctcgaggaccacaagggcgaactggaccatctggacctcaaggattcatgggaccccca
ggggaacctggaccagtaggatcaatgggaccccccggatctccaggagtcataggattg
cctggaaaagacggaaaagatggcgaagacggcaaacctggaaagtctggcgcgatggga
ccgtctggtcaaatgggtccaagaggtgtacccggaaatcccggaatgccaggagctaaa
ggtcacccgggttacaacggtctagatggagcaaaaggagaaaatggccaggaaggcgaa
aagggagacagtggtgaaaccggagaacaaggaagagatggtgcacttggacctcgtggc
ataccaggagagaggggacgacccggagcatcaggaccaccaggatcagctggatctgat
ggcgctgcaggacaatctggaccgccgggggcaatgggaccgtcaggttcaagaggtttc
ccaggaacccccggaagtaaaggtgaaagaggacccacaggcgcaggtggccctgaaggt
ccccaaggacagcgtggagaaagtggaactcctggaccaccaggtccttctggagcaact
ggcaatccaggaaccccaggaggtgcaggtgctaaaggatcttcgggttcaccaggtatc
agcggaccaccaggtattccaggatcacaaggaccacctgggcctcaaggaagcgtcggg
ccgggtggacaaaaaggaaaccagggcacaccgggcacgacagggtacaaaggagaccag
ggaccaaaaggatcacaaggatcaatgggatctcaaggcatacaaggaccacagggagaa
gaaggaaagaggggtcagcgtggagagtcaggacctgaaggagctcccggaccagttggc
gcgcggggttcaccaggtaatcgtggtttcccaggaagcgatggagccgttgggcaaaag
ggtctaagaggagagcgtggaaaacctggaaatattggttcaaagggttcaactggtgat
cttggacgtacaggagaacccggaatgccagggtcgaggggactttctggtagacctgga
cccgaaggaagagaaggaaaagccggacctgtcggaaaacctggtgctgatggtcgtgcg
ggagcagccggccctcctggtactcgtggtccaccgggacagatgggttttactggtcaa
aaaggaacttcgggagaatcaggtaaatctggagaaaagggtgcaggtggacccccaggt
ccaagaggagctgcaggtaaacctggcgaaattggaccacaaggaatagcaggacctccg
ggaatggttggagaaagaggtgaacaaggacaacccggttctcccggatttcaaggtctt
cctggaccgatgggtatttcaggaccaccaggaaaacccggtgaatcgggagtccctggc
gaaatgggatcatccggaccagcaggtgatcgaggacctcaaggatttccaggggctaga
ggaaaagcaggatcagttgggcaaccaggaccaagaggtattgccggtgttccaggagat
gatggtctcaagggtgctacaggaggtgaaggtagcaaaggagaacaaggtccagccgga
caatcaggtgttcccggacctcgaggacctgttggtatggaaggagctaagggtgaaatt
ggagattcaggtcctcaaggcaaggaaggagaaccaggaagtcagggagtacgtggacct
ccaggtctgataggagcaaatggtgctccaggaccaagcggactcaaaggggataacgga
gaacctggagaagcagggccagttggagctcgcggagaacccggattaagaggggattcc
ggaccggttggatctcctggattcccagggtcaccaggaccaggtggacaatcaggtaaa
aagggtgactctggagcacgaggacagaagggagattcaggatcacctggctctcaaggg
ccatctggcggaccaggacctcaaggcgagcccggagtacagggtgttaaaggaggccga
ggatcacagggggcacctggagctactggatttcccggaccgactggaagaccaggagca
ccaggatcacagggaccagctggacaacaaggatcgggtggtgaaccaggaaaacctgga
ccaagaggcgcaaggggtgataacggaaaagctggagcccgaggacaggatggtccccca
ggacccgccggaaatgaaggaccttcgggaaaaccaggaccaccaggagcaccgggagaa
aatggtccaagtggagaatttggaaagcccgggtcacagggtacaccaggtcttccgggt
cctccgggatctcggggtccaaatggtcaacgtggccctaacggagaatcaggaaaacag
ggacttccaggaccggctggagacagaggattgcctggagatgttggggcgagaggtttg
ggcggacctccaggtgagcgtggaccagagggtccacccggatcgcctggccaaagtgga
cgcgatggttcaaatggtataaagggagatcggggagcaataggtattgctggacctcct
ggtggacccggagtgcctgggccaatgggagaagctggtcccgaaggaaagtcaggatcg
agaggagatccgggcccgcctggaactcaaggatcccctggacctcaaggtggacgtggt
aatcccggatcacaaggagcccgtggattcaaaggaaatcatggagatctcggaccaagg
ggtctcaaaggtcatcgtggttacactggtattcaaggtttgcctggtccccaaggtaag
accggagaaaatggtttatcaggacagtcaggacctcagggaccaaggggatctactgga
cctcaaggacctgcaggaacagatggaaaatcaggtatgcccggacccagcggacctcaa
ggaccccggggtaatactggaagcgatggaatgcctggtgagcccggtaatcgcggacct
ccaggacctcctggaccacccggaccaacagttactattccattcccctatgatggtaac
aaaggaccagtcaatccgttgtatgctcaagatcaagcatttgcagatatggctactgtc
agcagagacaatgaggttatggtggcgttgaaagaacttcatagtgttgtggactctatc
aaggctccactcggactggataagaaatctcccagtcgaagctgtctcgatctttatttg
acagcacaagaagccggaattccagtcaagagcggatacaaatggattgatccaaacgga
ggatgccccgctgatgccatcgaagtacactgcgatttcgacaccaaagaaacttgcgta
tttgccaaccaacctcgcattgtaaacggaaccaatggaatggaagggctgagaaacaac
ggacaaatggccaacaagaacgtgttttatagtgacatgcatggccgacgaatgaattat
gatcctaaagttgaaaacacagtgaaaagtgccgattacaacagtcagctcactttcttg
aggcttctcagttcaacagctagacagagggtgaccttctggtgtaaaaacatggtggct
gtcaacgattttgatagcaactcaaaagaccatgcgttgaagttgaagggagtcggtgat
accattgtcagtgattatactacaataatggacgaatgttcgactaaacccagtagtatc
ggaaagactgtcatcgagtacatgactccaagagtcgctcacatgccacttgttgacata
gctccattcgtcactggtcgagtcgatgaagaatttggagttgagtttggaccagcttgc
tttaagtaa
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