KEGG   Styela clava (leathery sea squirt): 120342717
Entry
120342717         CDS       T07291                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoproteins A1 homolog isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
sclv  Styela clava (leathery sea squirt)
Pathway
sclv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sclv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120342717
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sclv03019]
    120342717
   03041 Spliceosome [BR:sclv03041]
    120342717
Messenger RNA biogenesis [BR:sclv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120342717
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120342717
Spliceosome [BR:sclv03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120342717
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 HnRNPA1_LC RRM_3 Nup35_RRM_2
Other DBs
NCBI-GeneID: 120342717
NCBI-ProteinID: XP_039267610
LinkDB
Position
Unknown
AA seq 490 aa
MADTNGDNEYEEPEQQRKLFIGGLNFDTTDDSLREYFTQFGEITDCIVMKDAISKKSRGF
GFVTFKKICMVDRAMDKRPHKLDGRTVTPKRAVSKEDSEKPGAHATVKKIFVGGIKDDTN
EEDLKDYFLKFGPVELVEVMMDRVSGNKRGFAFVTFADHDAVDKIVGKKFHKINNHNCEV
RKALPKAELDKSKAKQERSREGRDRYPPPPEYRDREYYDRYGPPRERSPPPPRYYDRAYD
SAYERPGYDRYPPSSHDRYPPPREYDRYGPPPDRYAPPPSEYDRYREYSSSSSSRDYPPR
EYSSSRSSVDYYRREGYSSERPPSYDTYPPRESERDRYPPPSSSTERSSSSAAYAERSPY
SSSQPSAYESSSRDPRDSRESRDPYARPSSSAYSSSTSAPPPSAYDSYSRAKAEPPVGYD
SYSRSKAEPPSELHGSSSPYDYAAYAQSSSSYGPVKSSSSYSSRSSGPYGGGYGTSSTAA
NGSSSAPSRY
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcagatacgaatggtgataatgagtatgaagagcccgagcagcaaagaaagctgttc
attggaggattgaattttgacacaacagatgacagtttaagagaatattttacacagttt
ggtgaaataactgattgcattgtaatgaaagatgccatttctaaaaaatctagaggattt
ggattcgtcacgttcaaaaaaatttgtatggttgatcgtgcgatggataaaagacctcac
aaactggatggaagaacagttacgcctaaaagagcagtttctaaagaagattctgaaaaa
ccaggtgctcatgctacagtcaaaaaaatatttgttggtggaataaaagacgacacaaac
gaagaagatttgaaggattattttctcaaatttggtcctgtcgaacttgttgaggtaatg
atggatagagtcagcggaaataagaggggttttgcattcgtcacatttgcagatcatgac
gctgttgataagattgttggtaaaaaatttcacaaaattaacaaccacaactgtgaagtg
agaaaagcattaccaaaagcagaattagacaagtcgaaagcaaagcaagagagaagcaga
gaaggacgtgatcgctatcccccaccgcctgaatatcgggacagggaatactatgacaga
tatggaccacctagagaaagatcacctcctccacctcggtattatgacagagcctatgat
tcagcttatgaaagaccgggttacgatagatatccaccaagtagtcatgatcgttatcct
ccaccacgtgaatatgacagatacggacctcctcctgatagatatgcaccacctcccagt
gaatatgatcgctaccgtgaatacagcagcagcagcagcagcagagactacccacccaga
gaatattcctcatctcgatcaagcgtggattattacagaagagaaggatattccagtgag
agaccaccatcatacgatacatatccaccccgagaaagtgaacgtgatcgttatcctcct
ccatcatcatctactgaacgttcttcatcatctgctgcttatgctgaacgtagtccttac
agcagttctcaaccatcagcctatgaaagtagtagcagagatcctcgtgatagccgtgag
tcgagagatccctatgctcgtccctcaagttctgcctacagttcatcaacttcagctcca
cctccttcggcatatgatagttacagcagagctaaagctgaaccaccagtgggttatgat
agctactctcgttctaaagctgagccgccaagtgagttgcatggttcaagtagtccttat
gattatgcagcatatgcacaaagcagcagcagttatggaccagtgaaaagcagcagctca
tacagtagcagatcatcaggaccttatggaggtggatatgggacatcaagtaccgcagca
aatggttcgagctctgcaccaagtcgttattag

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