Styela clava (leathery sea squirt): 120343042
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Entry
120343042 CDS
T07291
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
sclv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120343042
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120343042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120343042
04121 Ubiquitin system [BR:
sclv04121
]
120343042
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120343042
Enzymes [BR:
sclv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120343042
Spliceosome [BR:
sclv03041
]
Complex B
Other components
Prp19 complex
120343042
Complex C
Prp19-CDC5 complex
120343042
Ubiquitin system [BR:
sclv04121
]
Ubiquitin ligases (E3)
U-box type E3
120343042
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
120343042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_HPS5
PEP5_VPS11_N
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_WDR35_TULP_N
PROPPIN
WD40_like
Beta-prop_SPT8
U-box
Phage_GPA
Motif
Other DBs
NCBI-GeneID:
120343042
NCBI-ProteinID:
XP_039268045
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MSLICTISGEVPDHPCISQVSGCVFERRLLEKYVQEHGVDPTCNEPISPEQIIDIKTHSV
IKPKPPSATSIPAILKSLQDEWDACMLNSYTLRQQLQTTRQELAHALYQHDAACRMIARL
TKEATAAREALATLKPQAGNIGQPMPQVPAPQQMAVDEKMEYDGEPIGLTDDIIQKLMDK
AGVLTTERKKRGKHVPEGLVGTDDIRNYRQVASHPGLHSASVPGILCLDICASDNNRVIT
GGADKTAVVFDKESEQVISTLKGHSRKVSHVIYHPTEDIAFTCSPDSTIRIWSVQNGRCS
TVIRTHKAAVTGISLHALGDYLLSCSEDQHWAFSDIRSGKALCKVTDDAMGSALTCAQFH
PDGLIFGTGTQDSQIKIWDLKERTNVANFPGHSGPITDIAFSENGYYLATAADDSVVKLW
DLRKLKNFKTLTMDDRYEIKSLTFDKSGTYLAVAGTDIRVYFCKQWQELRNFTEHGSVAT
GVKFGQNASFIASCSMDRTLKYYGIV
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaatatgcacaatcagtggagaagtgccagatcacccatgcatatcccaagta
tctggatgtgtatttgaacgaagattgcttgaaaaatatgtccaagagcatggtgtcgac
cctacatgcaacgaacctatttcaccggaacagataattgatataaagactcactcagtg
atcaagcccaaaccaccttctgcaacaagtatcccagctatattgaagtccttacaagat
gagtgggatgcttgcatgctgaattcatatacattgagacagcagttacaaactacaaga
caagaacttgcacacgctttgtaccagcatgacgctgcgtgtagaatgattgctagattg
actaaagaagcaacagctgctcgtgaggctttggcgactctgaaaccacaagctggcaat
attgggcaaccaatgcctcaagttccagcgccgcaacaaatggctgtcgatgagaaaatg
gaatatgatggcgaacctattggtctcactgatgacatcatacagaagttgatggacaaa
gccggcgttctgacaacagaacgtaagaaacgtggaaaacacgtacctgaaggactggtt
ggcacggatgatattagaaattatagacaggttgcctcccaccctggtcttcactcagct
tctgttcccgggattctgtgtttggatatttgtgcttctgataacaacagagtgatcact
ggaggggcagacaagacagcagttgtatttgataaggagagtgagcaagtcatcagcact
ttgaaaggtcattctaggaaggtctctcatgtcatctaccatcctactgaggatattgcc
ttcacatgctctcctgattctacaattcgtatctggtcggttcaaaatggacgctgctca
actgtcatcaggacacacaaggctgcagtgactggtataagtttgcatgcattgggagat
tatcttctaagctgtagtgaagatcaacattgggcattcagtgacatcaggagcggaaaa
gctttgtgtaaagtaacggatgatgctatgggaagtgctctcacttgtgctcagtttcat
cctgatggtttgatctttggaaccggaacacaggacagtcagattaagatttgggatttg
aaggaaaggacaaacgttgcaaacttccctggacattctggaccaatcacagacatcgct
ttctcagagaatggttactatctggcaactgctgcagatgactctgtcgttaaactctgg
gatttgagaaaactgaagaacttcaagacattgaccatggatgatagatatgagatcaag
tcattgacgttcgataaatcaggaacctacttagcagttgcaggaaccgatatccgtgta
tacttttgcaaacaatggcaggaactgaggaatttcactgagcacggatccgtcgccact
ggagtaaagttcggccaaaatgcaagcttcattgcttcctgcagcatggatcgtactttg
aagtattatggcatagtgtga
DBGET
integrated database retrieval system
